Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 28177 | 84754;84755;84756 | chr2:178561603;178561602;178561601 | chr2:179426330;179426329;179426328 |
N2AB | 26536 | 79831;79832;79833 | chr2:178561603;178561602;178561601 | chr2:179426330;179426329;179426328 |
N2A | 25609 | 77050;77051;77052 | chr2:178561603;178561602;178561601 | chr2:179426330;179426329;179426328 |
N2B | 19112 | 57559;57560;57561 | chr2:178561603;178561602;178561601 | chr2:179426330;179426329;179426328 |
Novex-1 | 19237 | 57934;57935;57936 | chr2:178561603;178561602;178561601 | chr2:179426330;179426329;179426328 |
Novex-2 | 19304 | 58135;58136;58137 | chr2:178561603;178561602;178561601 | chr2:179426330;179426329;179426328 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | rs532274400 | -1.399 | 0.001 | N | 0.113 | 0.082 | 0.33835085245 | gnomAD-2.1.1 | 7.17E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 3.28E-05 | None | 0 | 7.84E-06 | 0 |
V/A | rs532274400 | -1.399 | 0.001 | N | 0.113 | 0.082 | 0.33835085245 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
V/A | rs532274400 | -1.399 | 0.001 | N | 0.113 | 0.082 | 0.33835085245 | gnomAD-4.0.0 | 2.56442E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.39458E-06 | 1.34167E-05 | 0 |
V/E | rs532274400 | -1.184 | 0.001 | N | 0.288 | 0.261 | 0.386882687439 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 1.92901E-04 | None | 0 | 0 | 0 | 0 | 0 |
V/E | rs532274400 | -1.184 | 0.001 | N | 0.288 | 0.261 | 0.386882687439 | 1000 genomes | 1.99681E-04 | None | None | None | None | I | None | 0 | 0 | None | None | 1E-03 | 0 | None | None | None | 0 | None |
V/E | rs532274400 | -1.184 | 0.001 | N | 0.288 | 0.261 | 0.386882687439 | gnomAD-4.0.0 | 6.56728E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 1.93349E-04 | None | 0 | 0 | 0 | 0 | 0 |
V/L | None | None | 0.029 | N | 0.255 | 0.046 | 0.395441342475 | gnomAD-4.0.0 | 6.84535E-07 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 1.87484E-05 | 0 | 0 | 0 | 0 |
V/M | None | None | 0.036 | N | 0.267 | 0.069 | 0.379881503574 | gnomAD-4.0.0 | 6.84535E-07 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99696E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.107 | likely_benign | 0.1037 | benign | -1.234 | Destabilizing | 0.001 | N | 0.113 | neutral | N | 0.355033907 | None | None | I |
V/C | 0.6317 | likely_pathogenic | 0.6011 | pathogenic | -1.027 | Destabilizing | 0.901 | D | 0.486 | neutral | None | None | None | None | I |
V/D | 0.2238 | likely_benign | 0.1893 | benign | -1.122 | Destabilizing | 0.209 | N | 0.405 | neutral | None | None | None | None | I |
V/E | 0.1223 | likely_benign | 0.1186 | benign | -1.107 | Destabilizing | 0.001 | N | 0.288 | neutral | N | 0.331178399 | None | None | I |
V/F | 0.1841 | likely_benign | 0.1631 | benign | -0.894 | Destabilizing | 0.818 | D | 0.537 | neutral | None | None | None | None | I |
V/G | 0.1975 | likely_benign | 0.1806 | benign | -1.536 | Destabilizing | 0.166 | N | 0.348 | neutral | N | 0.40962054 | None | None | I |
V/H | 0.4246 | ambiguous | 0.3815 | ambiguous | -0.923 | Destabilizing | 0.901 | D | 0.478 | neutral | None | None | None | None | I |
V/I | 0.0751 | likely_benign | 0.074 | benign | -0.507 | Destabilizing | 0.004 | N | 0.127 | neutral | None | None | None | None | I |
V/K | 0.1837 | likely_benign | 0.1799 | benign | -1.15 | Destabilizing | 0.007 | N | 0.293 | neutral | None | None | None | None | I |
V/L | 0.1395 | likely_benign | 0.1296 | benign | -0.507 | Destabilizing | 0.029 | N | 0.255 | neutral | N | 0.448504215 | None | None | I |
V/M | 0.1071 | likely_benign | 0.1049 | benign | -0.608 | Destabilizing | 0.036 | N | 0.267 | neutral | N | 0.412199486 | None | None | I |
V/N | 0.1906 | likely_benign | 0.157 | benign | -1.027 | Destabilizing | 0.561 | D | 0.479 | neutral | None | None | None | None | I |
V/P | 0.1762 | likely_benign | 0.1716 | benign | -0.715 | Destabilizing | 0.722 | D | 0.514 | neutral | None | None | None | None | I |
V/Q | 0.1954 | likely_benign | 0.1826 | benign | -1.142 | Destabilizing | 0.39 | N | 0.477 | neutral | None | None | None | None | I |
V/R | 0.2249 | likely_benign | 0.209 | benign | -0.652 | Destabilizing | 0.002 | N | 0.383 | neutral | None | None | None | None | I |
V/S | 0.1532 | likely_benign | 0.1351 | benign | -1.501 | Destabilizing | 0.209 | N | 0.319 | neutral | None | None | None | None | I |
V/T | 0.1306 | likely_benign | 0.1208 | benign | -1.363 | Destabilizing | 0.345 | N | 0.29 | neutral | None | None | None | None | I |
V/W | 0.7752 | likely_pathogenic | 0.7416 | pathogenic | -1.052 | Destabilizing | 0.991 | D | 0.485 | neutral | None | None | None | None | I |
V/Y | 0.4377 | ambiguous | 0.3885 | ambiguous | -0.764 | Destabilizing | 0.901 | D | 0.546 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.