Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 28190 | 84793;84794;84795 | chr2:178561564;178561563;178561562 | chr2:179426291;179426290;179426289 |
N2AB | 26549 | 79870;79871;79872 | chr2:178561564;178561563;178561562 | chr2:179426291;179426290;179426289 |
N2A | 25622 | 77089;77090;77091 | chr2:178561564;178561563;178561562 | chr2:179426291;179426290;179426289 |
N2B | 19125 | 57598;57599;57600 | chr2:178561564;178561563;178561562 | chr2:179426291;179426290;179426289 |
Novex-1 | 19250 | 57973;57974;57975 | chr2:178561564;178561563;178561562 | chr2:179426291;179426290;179426289 |
Novex-2 | 19317 | 58174;58175;58176 | chr2:178561564;178561563;178561562 | chr2:179426291;179426290;179426289 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
H/P | None | None | 0.99 | N | 0.765 | 0.556 | 0.589665606642 | gnomAD-4.0.0 | 1.59244E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.85981E-06 | 0 | 0 |
H/Q | None | None | 0.97 | N | 0.719 | 0.325 | 0.348983352498 | gnomAD-4.0.0 | 1.20032E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.3125E-06 | 0 | 0 |
H/R | rs1248103386 | -1.544 | 0.97 | N | 0.719 | 0.48 | 0.383089235449 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.61E-05 | None | 0 | None | 0 | 0 | 0 |
H/R | rs1248103386 | -1.544 | 0.97 | N | 0.719 | 0.48 | 0.383089235449 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
H/R | rs1248103386 | -1.544 | 0.97 | N | 0.719 | 0.48 | 0.383089235449 | gnomAD-4.0.0 | 2.56354E-06 | None | None | None | None | N | None | 1.69102E-05 | 0 | None | 0 | 2.43049E-05 | None | 0 | 0 | 0 | 0 | 0 |
H/Y | rs770757137 | 0.17 | 0.014 | N | 0.47 | 0.374 | 0.257292322809 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.91E-06 | 0 |
H/Y | rs770757137 | 0.17 | 0.014 | N | 0.47 | 0.374 | 0.257292322809 | gnomAD-4.0.0 | 1.59256E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 3.02572E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
H/A | 0.9634 | likely_pathogenic | 0.9559 | pathogenic | -2.059 | Highly Destabilizing | 0.86 | D | 0.702 | prob.neutral | None | None | None | None | N |
H/C | 0.6113 | likely_pathogenic | 0.5884 | pathogenic | -1.156 | Destabilizing | 0.998 | D | 0.794 | deleterious | None | None | None | None | N |
H/D | 0.9701 | likely_pathogenic | 0.9623 | pathogenic | -2.055 | Highly Destabilizing | 0.99 | D | 0.725 | prob.delet. | N | 0.471720725 | None | None | N |
H/E | 0.9516 | likely_pathogenic | 0.9402 | pathogenic | -1.86 | Destabilizing | 0.926 | D | 0.671 | neutral | None | None | None | None | N |
H/F | 0.6362 | likely_pathogenic | 0.6441 | pathogenic | -0.037 | Destabilizing | 0.915 | D | 0.725 | prob.delet. | None | None | None | None | N |
H/G | 0.979 | likely_pathogenic | 0.9718 | pathogenic | -2.447 | Highly Destabilizing | 0.926 | D | 0.714 | prob.delet. | None | None | None | None | N |
H/I | 0.7741 | likely_pathogenic | 0.7674 | pathogenic | -0.891 | Destabilizing | 0.956 | D | 0.799 | deleterious | None | None | None | None | N |
H/K | 0.8964 | likely_pathogenic | 0.8669 | pathogenic | -1.554 | Destabilizing | 0.978 | D | 0.727 | prob.delet. | None | None | None | None | N |
H/L | 0.5806 | likely_pathogenic | 0.5668 | pathogenic | -0.891 | Destabilizing | 0.698 | D | 0.755 | deleterious | N | 0.488579969 | None | None | N |
H/M | 0.9173 | likely_pathogenic | 0.9098 | pathogenic | -1.023 | Destabilizing | 0.998 | D | 0.754 | deleterious | None | None | None | None | N |
H/N | 0.6557 | likely_pathogenic | 0.6064 | pathogenic | -2.164 | Highly Destabilizing | 0.904 | D | 0.662 | neutral | N | 0.511936832 | None | None | N |
H/P | 0.9916 | likely_pathogenic | 0.9888 | pathogenic | -1.274 | Destabilizing | 0.99 | D | 0.765 | deleterious | N | 0.503120296 | None | None | N |
H/Q | 0.8128 | likely_pathogenic | 0.7778 | pathogenic | -1.727 | Destabilizing | 0.97 | D | 0.719 | prob.delet. | N | 0.515707855 | None | None | N |
H/R | 0.5705 | likely_pathogenic | 0.5081 | ambiguous | -1.815 | Destabilizing | 0.97 | D | 0.719 | prob.delet. | N | 0.504258711 | None | None | N |
H/S | 0.8972 | likely_pathogenic | 0.8802 | pathogenic | -2.25 | Highly Destabilizing | 0.926 | D | 0.713 | prob.delet. | None | None | None | None | N |
H/T | 0.914 | likely_pathogenic | 0.9012 | pathogenic | -1.952 | Destabilizing | 0.978 | D | 0.71 | prob.delet. | None | None | None | None | N |
H/V | 0.7916 | likely_pathogenic | 0.7832 | pathogenic | -1.274 | Destabilizing | 0.956 | D | 0.766 | deleterious | None | None | None | None | N |
H/W | 0.5804 | likely_pathogenic | 0.5906 | pathogenic | 0.474 | Stabilizing | 0.994 | D | 0.751 | deleterious | None | None | None | None | N |
H/Y | 0.2482 | likely_benign | 0.2537 | benign | 0.199 | Stabilizing | 0.014 | N | 0.47 | neutral | N | 0.474632024 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.