Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 28220 | 84883;84884;84885 | chr2:178561474;178561473;178561472 | chr2:179426201;179426200;179426199 |
N2AB | 26579 | 79960;79961;79962 | chr2:178561474;178561473;178561472 | chr2:179426201;179426200;179426199 |
N2A | 25652 | 77179;77180;77181 | chr2:178561474;178561473;178561472 | chr2:179426201;179426200;179426199 |
N2B | 19155 | 57688;57689;57690 | chr2:178561474;178561473;178561472 | chr2:179426201;179426200;179426199 |
Novex-1 | 19280 | 58063;58064;58065 | chr2:178561474;178561473;178561472 | chr2:179426201;179426200;179426199 |
Novex-2 | 19347 | 58264;58265;58266 | chr2:178561474;178561473;178561472 | chr2:179426201;179426200;179426199 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/G | None | None | 0.815 | N | 0.398 | 0.285 | 0.302793454619 | gnomAD-4.0.0 | 1.59133E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.85829E-06 | 0 | 0 |
D/H | rs538385596 | 0.184 | 0.939 | N | 0.467 | 0.318 | 0.316198179892 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.89E-06 | 0 |
D/H | rs538385596 | 0.184 | 0.939 | N | 0.467 | 0.318 | 0.316198179892 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
D/H | rs538385596 | 0.184 | 0.939 | N | 0.467 | 0.318 | 0.316198179892 | gnomAD-4.0.0 | 1.85912E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.54285E-06 | 0 | 0 |
D/N | rs538385596 | -0.203 | 0.684 | N | 0.426 | 0.194 | 0.268660756437 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.89E-06 | 0 |
D/N | rs538385596 | -0.203 | 0.684 | N | 0.426 | 0.194 | 0.268660756437 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
D/N | rs538385596 | -0.203 | 0.684 | N | 0.426 | 0.194 | 0.268660756437 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 1E-03 | None | None | None | 0 | None |
D/N | rs538385596 | -0.203 | 0.684 | N | 0.426 | 0.194 | 0.268660756437 | gnomAD-4.0.0 | 6.84229E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99478E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/A | 0.1582 | likely_benign | 0.1527 | benign | -0.166 | Destabilizing | 0.684 | D | 0.385 | neutral | N | 0.4528326 | None | None | N |
D/C | 0.579 | likely_pathogenic | 0.5634 | ambiguous | -0.088 | Destabilizing | 0.996 | D | 0.569 | neutral | None | None | None | None | N |
D/E | 0.0966 | likely_benign | 0.0935 | benign | -0.284 | Destabilizing | 0.003 | N | 0.116 | neutral | N | 0.351436241 | None | None | N |
D/F | 0.5996 | likely_pathogenic | 0.5767 | pathogenic | 0.299 | Stabilizing | 0.91 | D | 0.533 | neutral | None | None | None | None | N |
D/G | 0.2218 | likely_benign | 0.2104 | benign | -0.424 | Destabilizing | 0.815 | D | 0.398 | neutral | N | 0.516094644 | None | None | N |
D/H | 0.2535 | likely_benign | 0.2459 | benign | 0.607 | Stabilizing | 0.939 | D | 0.467 | neutral | N | 0.45144852 | None | None | N |
D/I | 0.2764 | likely_benign | 0.2575 | benign | 0.485 | Stabilizing | 0.835 | D | 0.471 | neutral | None | None | None | None | N |
D/K | 0.3289 | likely_benign | 0.3064 | benign | 0.538 | Stabilizing | 0.59 | D | 0.37 | neutral | None | None | None | None | N |
D/L | 0.3072 | likely_benign | 0.2964 | benign | 0.485 | Stabilizing | 0.009 | N | 0.339 | neutral | None | None | None | None | N |
D/M | 0.4789 | ambiguous | 0.4551 | ambiguous | 0.466 | Stabilizing | 0.974 | D | 0.531 | neutral | None | None | None | None | N |
D/N | 0.1289 | likely_benign | 0.1225 | benign | -0.185 | Destabilizing | 0.684 | D | 0.426 | neutral | N | 0.43594035 | None | None | N |
D/P | 0.7351 | likely_pathogenic | 0.736 | pathogenic | 0.291 | Stabilizing | 0.953 | D | 0.447 | neutral | None | None | None | None | N |
D/Q | 0.24 | likely_benign | 0.2296 | benign | -0.064 | Destabilizing | 0.835 | D | 0.378 | neutral | None | None | None | None | N |
D/R | 0.3615 | ambiguous | 0.3345 | benign | 0.821 | Stabilizing | 0.91 | D | 0.466 | neutral | None | None | None | None | N |
D/S | 0.1292 | likely_benign | 0.125 | benign | -0.255 | Destabilizing | 0.742 | D | 0.344 | neutral | None | None | None | None | N |
D/T | 0.1912 | likely_benign | 0.1885 | benign | -0.017 | Destabilizing | 0.742 | D | 0.422 | neutral | None | None | None | None | N |
D/V | 0.1536 | likely_benign | 0.1461 | benign | 0.291 | Stabilizing | 0.521 | D | 0.435 | neutral | N | 0.427416867 | None | None | N |
D/W | 0.8605 | likely_pathogenic | 0.8554 | pathogenic | 0.54 | Stabilizing | 0.996 | D | 0.645 | neutral | None | None | None | None | N |
D/Y | 0.2297 | likely_benign | 0.2201 | benign | 0.596 | Stabilizing | 0.939 | D | 0.535 | neutral | N | 0.478653764 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.