Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 28240 | 84943;84944;84945 | chr2:178561414;178561413;178561412 | chr2:179426141;179426140;179426139 |
N2AB | 26599 | 80020;80021;80022 | chr2:178561414;178561413;178561412 | chr2:179426141;179426140;179426139 |
N2A | 25672 | 77239;77240;77241 | chr2:178561414;178561413;178561412 | chr2:179426141;179426140;179426139 |
N2B | 19175 | 57748;57749;57750 | chr2:178561414;178561413;178561412 | chr2:179426141;179426140;179426139 |
Novex-1 | 19300 | 58123;58124;58125 | chr2:178561414;178561413;178561412 | chr2:179426141;179426140;179426139 |
Novex-2 | 19367 | 58324;58325;58326 | chr2:178561414;178561413;178561412 | chr2:179426141;179426140;179426139 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
C/Y | rs1703613576 | None | 0.99 | N | 0.753 | 0.346 | 0.552326942858 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | I | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
C/Y | rs1703613576 | None | 0.99 | N | 0.753 | 0.346 | 0.552326942858 | gnomAD-4.0.0 | 6.57281E-06 | None | None | None | None | I | None | 2.41243E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
C/A | 0.2956 | likely_benign | 0.2842 | benign | -1.397 | Destabilizing | 0.717 | D | 0.503 | neutral | None | None | None | None | I |
C/D | 0.8914 | likely_pathogenic | 0.8967 | pathogenic | 0.312 | Stabilizing | 0.978 | D | 0.759 | deleterious | None | None | None | None | I |
C/E | 0.9026 | likely_pathogenic | 0.8999 | pathogenic | 0.383 | Stabilizing | 0.956 | D | 0.766 | deleterious | None | None | None | None | I |
C/F | 0.3051 | likely_benign | 0.2996 | benign | -0.832 | Destabilizing | 0.99 | D | 0.755 | deleterious | N | 0.440513877 | None | None | I |
C/G | 0.2251 | likely_benign | 0.2362 | benign | -1.67 | Destabilizing | 0.942 | D | 0.712 | prob.delet. | N | 0.513992915 | None | None | I |
C/H | 0.683 | likely_pathogenic | 0.6718 | pathogenic | -1.624 | Destabilizing | 0.998 | D | 0.783 | deleterious | None | None | None | None | I |
C/I | 0.5969 | likely_pathogenic | 0.5601 | ambiguous | -0.719 | Destabilizing | 0.978 | D | 0.675 | prob.neutral | None | None | None | None | I |
C/K | 0.8946 | likely_pathogenic | 0.8899 | pathogenic | -0.538 | Destabilizing | 0.956 | D | 0.757 | deleterious | None | None | None | None | I |
C/L | 0.579 | likely_pathogenic | 0.5669 | pathogenic | -0.719 | Destabilizing | 0.86 | D | 0.53 | neutral | None | None | None | None | I |
C/M | 0.6838 | likely_pathogenic | 0.6719 | pathogenic | -0.077 | Destabilizing | 0.998 | D | 0.71 | prob.delet. | None | None | None | None | I |
C/N | 0.6614 | likely_pathogenic | 0.6775 | pathogenic | -0.408 | Destabilizing | 0.978 | D | 0.791 | deleterious | None | None | None | None | I |
C/P | 0.2815 | likely_benign | 0.2654 | benign | -0.919 | Destabilizing | 0.019 | N | 0.557 | neutral | None | None | None | None | I |
C/Q | 0.743 | likely_pathogenic | 0.724 | pathogenic | -0.35 | Destabilizing | 0.978 | D | 0.797 | deleterious | None | None | None | None | I |
C/R | 0.6797 | likely_pathogenic | 0.669 | pathogenic | -0.411 | Destabilizing | 0.97 | D | 0.796 | deleterious | N | 0.502525128 | None | None | I |
C/S | 0.31 | likely_benign | 0.3237 | benign | -0.989 | Destabilizing | 0.822 | D | 0.605 | neutral | N | 0.469759348 | None | None | I |
C/T | 0.6013 | likely_pathogenic | 0.5982 | pathogenic | -0.74 | Destabilizing | 0.86 | D | 0.618 | neutral | None | None | None | None | I |
C/V | 0.4863 | ambiguous | 0.4544 | ambiguous | -0.919 | Destabilizing | 0.926 | D | 0.597 | neutral | None | None | None | None | I |
C/W | 0.6654 | likely_pathogenic | 0.6528 | pathogenic | -0.784 | Destabilizing | 0.997 | D | 0.731 | prob.delet. | N | 0.46258266 | None | None | I |
C/Y | 0.3971 | ambiguous | 0.3862 | ambiguous | -0.758 | Destabilizing | 0.99 | D | 0.753 | deleterious | N | 0.441495311 | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.