Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 28291 | 85096;85097;85098 | chr2:178561261;178561260;178561259 | chr2:179425988;179425987;179425986 |
N2AB | 26650 | 80173;80174;80175 | chr2:178561261;178561260;178561259 | chr2:179425988;179425987;179425986 |
N2A | 25723 | 77392;77393;77394 | chr2:178561261;178561260;178561259 | chr2:179425988;179425987;179425986 |
N2B | 19226 | 57901;57902;57903 | chr2:178561261;178561260;178561259 | chr2:179425988;179425987;179425986 |
Novex-1 | 19351 | 58276;58277;58278 | chr2:178561261;178561260;178561259 | chr2:179425988;179425987;179425986 |
Novex-2 | 19418 | 58477;58478;58479 | chr2:178561261;178561260;178561259 | chr2:179425988;179425987;179425986 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs192152102 | -2.004 | 1.0 | N | 0.787 | 0.344 | None | gnomAD-2.1.1 | 7.14276E-04 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 2.61421E-04 | None | 2.00096E-03 | 1.00027E-03 | 1.96685E-03 |
R/C | rs192152102 | -2.004 | 1.0 | N | 0.787 | 0.344 | None | gnomAD-3.1.2 | 4.34033E-04 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 1.97927E-03 | 0 | 6.47078E-04 | 0 | 4.79386E-04 |
R/C | rs192152102 | -2.004 | 1.0 | N | 0.787 | 0.344 | None | 1000 genomes | 3.99361E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 2E-03 | None | None | None | 0 | None |
R/C | rs192152102 | -2.004 | 1.0 | N | 0.787 | 0.344 | None | gnomAD-4.0.0 | 5.85006E-04 | None | None | None | None | N | None | 3.99989E-05 | 1.66639E-05 | None | 0 | 0 | None | 2.2991E-03 | 3.29924E-04 | 6.17913E-04 | 1.53725E-04 | 7.6827E-04 |
R/H | rs774924903 | -2.024 | 0.159 | N | 0.447 | 0.175 | 0.188950314367 | gnomAD-2.1.1 | 3.21E-05 | None | None | None | None | N | None | 4.13E-05 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 5.47E-05 | 0 |
R/H | rs774924903 | -2.024 | 0.159 | N | 0.447 | 0.175 | 0.188950314367 | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 4.41E-05 | 0 | 0 |
R/H | rs774924903 | -2.024 | 0.159 | N | 0.447 | 0.175 | 0.188950314367 | gnomAD-4.0.0 | 3.40863E-05 | None | None | None | None | N | None | 2.67037E-05 | 0 | None | 0 | 2.23105E-05 | None | 0 | 0 | 4.06852E-05 | 2.19587E-05 | 3.20215E-05 |
R/S | None | None | 0.96 | N | 0.651 | 0.337 | 0.317084106153 | gnomAD-4.0.0 | 6.84238E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99452E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.8114 | likely_pathogenic | 0.786 | pathogenic | -2.221 | Highly Destabilizing | 0.86 | D | 0.653 | neutral | None | None | None | None | N |
R/C | 0.2495 | likely_benign | 0.2396 | benign | -2.126 | Highly Destabilizing | 1.0 | D | 0.787 | deleterious | N | 0.479024879 | None | None | N |
R/D | 0.9791 | likely_pathogenic | 0.9755 | pathogenic | -1.62 | Destabilizing | 0.978 | D | 0.74 | deleterious | None | None | None | None | N |
R/E | 0.8165 | likely_pathogenic | 0.8097 | pathogenic | -1.36 | Destabilizing | 0.86 | D | 0.63 | neutral | None | None | None | None | N |
R/F | 0.8061 | likely_pathogenic | 0.7888 | pathogenic | -1.255 | Destabilizing | 0.915 | D | 0.766 | deleterious | None | None | None | None | N |
R/G | 0.7105 | likely_pathogenic | 0.7086 | pathogenic | -2.595 | Highly Destabilizing | 0.96 | D | 0.696 | prob.neutral | N | 0.475229898 | None | None | N |
R/H | 0.1947 | likely_benign | 0.1948 | benign | -1.841 | Destabilizing | 0.159 | N | 0.447 | neutral | N | 0.472013895 | None | None | N |
R/I | 0.6715 | likely_pathogenic | 0.6574 | pathogenic | -1.106 | Destabilizing | 0.956 | D | 0.773 | deleterious | None | None | None | None | N |
R/K | 0.1473 | likely_benign | 0.1372 | benign | -1.171 | Destabilizing | 0.926 | D | 0.629 | neutral | None | None | None | None | N |
R/L | 0.5598 | ambiguous | 0.5471 | ambiguous | -1.106 | Destabilizing | 0.855 | D | 0.697 | prob.neutral | N | 0.4785179 | None | None | N |
R/M | 0.5433 | ambiguous | 0.5342 | ambiguous | -1.572 | Destabilizing | 0.998 | D | 0.7 | prob.neutral | None | None | None | None | N |
R/N | 0.9223 | likely_pathogenic | 0.9116 | pathogenic | -1.84 | Destabilizing | 0.86 | D | 0.642 | neutral | None | None | None | None | N |
R/P | 0.995 | likely_pathogenic | 0.9949 | pathogenic | -1.471 | Destabilizing | 0.996 | D | 0.747 | deleterious | N | 0.508564799 | None | None | N |
R/Q | 0.1859 | likely_benign | 0.1828 | benign | -1.612 | Destabilizing | 0.978 | D | 0.66 | neutral | None | None | None | None | N |
R/S | 0.8659 | likely_pathogenic | 0.8424 | pathogenic | -2.687 | Highly Destabilizing | 0.96 | D | 0.651 | neutral | N | 0.466329128 | None | None | N |
R/T | 0.7689 | likely_pathogenic | 0.7508 | pathogenic | -2.19 | Highly Destabilizing | 0.978 | D | 0.666 | neutral | None | None | None | None | N |
R/V | 0.7242 | likely_pathogenic | 0.7092 | pathogenic | -1.471 | Destabilizing | 0.956 | D | 0.754 | deleterious | None | None | None | None | N |
R/W | 0.3966 | ambiguous | 0.3916 | ambiguous | -0.716 | Destabilizing | 0.994 | D | 0.785 | deleterious | None | None | None | None | N |
R/Y | 0.5415 | ambiguous | 0.5205 | ambiguous | -0.676 | Destabilizing | 0.019 | N | 0.595 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.