Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 28447 | 85564;85565;85566 | chr2:178560793;178560792;178560791 | chr2:179425520;179425519;179425518 |
N2AB | 26806 | 80641;80642;80643 | chr2:178560793;178560792;178560791 | chr2:179425520;179425519;179425518 |
N2A | 25879 | 77860;77861;77862 | chr2:178560793;178560792;178560791 | chr2:179425520;179425519;179425518 |
N2B | 19382 | 58369;58370;58371 | chr2:178560793;178560792;178560791 | chr2:179425520;179425519;179425518 |
Novex-1 | 19507 | 58744;58745;58746 | chr2:178560793;178560792;178560791 | chr2:179425520;179425519;179425518 |
Novex-2 | 19574 | 58945;58946;58947 | chr2:178560793;178560792;178560791 | chr2:179425520;179425519;179425518 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/L | rs1269228304 | -0.68 | 0.476 | D | 0.723 | 0.583 | 0.437420747294 | gnomAD-2.1.1 | 8.05E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 6.54E-05 | None | 0 | 0 | 0 |
V/L | rs1269228304 | -0.68 | 0.476 | D | 0.723 | 0.583 | 0.437420747294 | gnomAD-4.0.0 | 3.18315E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.43283E-05 | 3.02499E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.9154 | likely_pathogenic | 0.9127 | pathogenic | -1.872 | Destabilizing | 0.928 | D | 0.727 | prob.delet. | D | 0.627340592 | None | None | I |
V/C | 0.9822 | likely_pathogenic | 0.9827 | pathogenic | -1.498 | Destabilizing | 0.999 | D | 0.842 | deleterious | None | None | None | None | I |
V/D | 0.993 | likely_pathogenic | 0.9946 | pathogenic | -2.404 | Highly Destabilizing | 0.997 | D | 0.848 | deleterious | None | None | None | None | I |
V/E | 0.9832 | likely_pathogenic | 0.9875 | pathogenic | -2.379 | Highly Destabilizing | 0.996 | D | 0.84 | deleterious | D | 0.627946005 | None | None | I |
V/F | 0.8646 | likely_pathogenic | 0.8907 | pathogenic | -1.502 | Destabilizing | 0.983 | D | 0.859 | deleterious | None | None | None | None | I |
V/G | 0.9177 | likely_pathogenic | 0.9212 | pathogenic | -2.216 | Highly Destabilizing | 0.989 | D | 0.829 | deleterious | D | 0.627946005 | None | None | I |
V/H | 0.9955 | likely_pathogenic | 0.9965 | pathogenic | -1.747 | Destabilizing | 0.999 | D | 0.82 | deleterious | None | None | None | None | I |
V/I | 0.1233 | likely_benign | 0.1265 | benign | -0.996 | Destabilizing | 0.039 | N | 0.544 | neutral | N | 0.515296653 | None | None | I |
V/K | 0.9865 | likely_pathogenic | 0.9909 | pathogenic | -1.595 | Destabilizing | 0.992 | D | 0.839 | deleterious | None | None | None | None | I |
V/L | 0.8349 | likely_pathogenic | 0.8454 | pathogenic | -0.996 | Destabilizing | 0.476 | N | 0.723 | prob.delet. | D | 0.625322549 | None | None | I |
V/M | 0.8448 | likely_pathogenic | 0.8552 | pathogenic | -0.812 | Destabilizing | 0.983 | D | 0.872 | deleterious | None | None | None | None | I |
V/N | 0.9787 | likely_pathogenic | 0.9817 | pathogenic | -1.533 | Destabilizing | 0.997 | D | 0.851 | deleterious | None | None | None | None | I |
V/P | 0.9837 | likely_pathogenic | 0.9859 | pathogenic | -1.257 | Destabilizing | 0.997 | D | 0.845 | deleterious | None | None | None | None | I |
V/Q | 0.9848 | likely_pathogenic | 0.9891 | pathogenic | -1.721 | Destabilizing | 0.997 | D | 0.854 | deleterious | None | None | None | None | I |
V/R | 0.9744 | likely_pathogenic | 0.9821 | pathogenic | -1.041 | Destabilizing | 0.997 | D | 0.849 | deleterious | None | None | None | None | I |
V/S | 0.9579 | likely_pathogenic | 0.96 | pathogenic | -2.017 | Highly Destabilizing | 0.992 | D | 0.831 | deleterious | None | None | None | None | I |
V/T | 0.9391 | likely_pathogenic | 0.9421 | pathogenic | -1.888 | Destabilizing | 0.944 | D | 0.817 | deleterious | None | None | None | None | I |
V/W | 0.9981 | likely_pathogenic | 0.9984 | pathogenic | -1.751 | Destabilizing | 0.999 | D | 0.787 | deleterious | None | None | None | None | I |
V/Y | 0.9808 | likely_pathogenic | 0.9854 | pathogenic | -1.469 | Destabilizing | 0.992 | D | 0.857 | deleterious | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.