Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 28550 | 85873;85874;85875 | chr2:178560484;178560483;178560482 | chr2:179425211;179425210;179425209 |
N2AB | 26909 | 80950;80951;80952 | chr2:178560484;178560483;178560482 | chr2:179425211;179425210;179425209 |
N2A | 25982 | 78169;78170;78171 | chr2:178560484;178560483;178560482 | chr2:179425211;179425210;179425209 |
N2B | 19485 | 58678;58679;58680 | chr2:178560484;178560483;178560482 | chr2:179425211;179425210;179425209 |
Novex-1 | 19610 | 59053;59054;59055 | chr2:178560484;178560483;178560482 | chr2:179425211;179425210;179425209 |
Novex-2 | 19677 | 59254;59255;59256 | chr2:178560484;178560483;178560482 | chr2:179425211;179425210;179425209 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/D | rs727505194 | -0.017 | 0.449 | N | 0.817 | 0.33 | None | gnomAD-2.1.1 | 1.21E-05 | None | None | None | None | I | None | 1.93999E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
V/D | rs727505194 | -0.017 | 0.449 | N | 0.817 | 0.33 | None | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | I | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
V/D | rs727505194 | -0.017 | 0.449 | N | 0.817 | 0.33 | None | gnomAD-4.0.0 | 4.95944E-06 | None | None | None | None | I | None | 1.0686E-04 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.1666 | likely_benign | 0.1565 | benign | -0.387 | Destabilizing | 0.046 | N | 0.431 | neutral | N | 0.485923666 | None | None | I |
V/C | 0.6447 | likely_pathogenic | 0.6407 | pathogenic | -0.614 | Destabilizing | 0.892 | D | 0.549 | neutral | None | None | None | None | I |
V/D | 0.4719 | ambiguous | 0.4308 | ambiguous | 0.018 | Stabilizing | 0.449 | N | 0.817 | deleterious | N | 0.509121004 | None | None | I |
V/E | 0.296 | likely_benign | 0.2764 | benign | -0.098 | Destabilizing | 0.519 | D | 0.784 | deleterious | None | None | None | None | I |
V/F | 0.2085 | likely_benign | 0.2005 | benign | -0.804 | Destabilizing | 0.449 | N | 0.537 | neutral | N | 0.476431213 | None | None | I |
V/G | 0.2923 | likely_benign | 0.2694 | benign | -0.477 | Destabilizing | 0.449 | N | 0.709 | prob.delet. | N | 0.497511209 | None | None | I |
V/H | 0.551 | ambiguous | 0.5073 | ambiguous | -0.174 | Destabilizing | 0.962 | D | 0.797 | deleterious | None | None | None | None | I |
V/I | 0.0762 | likely_benign | 0.0761 | benign | -0.305 | Destabilizing | 0.001 | N | 0.15 | neutral | N | 0.492350993 | None | None | I |
V/K | 0.2599 | likely_benign | 0.2446 | benign | -0.061 | Destabilizing | 0.519 | D | 0.783 | deleterious | None | None | None | None | I |
V/L | 0.1581 | likely_benign | 0.1526 | benign | -0.305 | Destabilizing | 0.016 | N | 0.427 | neutral | N | 0.481901926 | None | None | I |
V/M | 0.1401 | likely_benign | 0.1349 | benign | -0.222 | Destabilizing | 0.519 | D | 0.504 | neutral | None | None | None | None | I |
V/N | 0.3223 | likely_benign | 0.28 | benign | 0.106 | Stabilizing | 0.519 | D | 0.811 | deleterious | None | None | None | None | I |
V/P | 0.249 | likely_benign | 0.2444 | benign | -0.3 | Destabilizing | 0.687 | D | 0.819 | deleterious | None | None | None | None | I |
V/Q | 0.2841 | likely_benign | 0.2571 | benign | -0.157 | Destabilizing | 0.687 | D | 0.8 | deleterious | None | None | None | None | I |
V/R | 0.2403 | likely_benign | 0.2155 | benign | 0.336 | Stabilizing | 0.519 | D | 0.824 | deleterious | None | None | None | None | I |
V/S | 0.2299 | likely_benign | 0.2102 | benign | -0.28 | Destabilizing | 0.351 | N | 0.527 | neutral | None | None | None | None | I |
V/T | 0.1675 | likely_benign | 0.1595 | benign | -0.299 | Destabilizing | 0.001 | N | 0.292 | neutral | None | None | None | None | I |
V/W | 0.8112 | likely_pathogenic | 0.7987 | pathogenic | -0.852 | Destabilizing | 0.962 | D | 0.76 | deleterious | None | None | None | None | I |
V/Y | 0.5228 | ambiguous | 0.5013 | ambiguous | -0.498 | Destabilizing | 0.687 | D | 0.485 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.