Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 28836 | 86731;86732;86733 | chr2:178559626;178559625;178559624 | chr2:179424353;179424352;179424351 |
N2AB | 27195 | 81808;81809;81810 | chr2:178559626;178559625;178559624 | chr2:179424353;179424352;179424351 |
N2A | 26268 | 79027;79028;79029 | chr2:178559626;178559625;178559624 | chr2:179424353;179424352;179424351 |
N2B | 19771 | 59536;59537;59538 | chr2:178559626;178559625;178559624 | chr2:179424353;179424352;179424351 |
Novex-1 | 19896 | 59911;59912;59913 | chr2:178559626;178559625;178559624 | chr2:179424353;179424352;179424351 |
Novex-2 | 19963 | 60112;60113;60114 | chr2:178559626;178559625;178559624 | chr2:179424353;179424352;179424351 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/V | rs1335461948 | None | 0.004 | N | 0.331 | 0.053 | 0.381916209588 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
L/V | rs1335461948 | None | 0.004 | N | 0.331 | 0.053 | 0.381916209588 | gnomAD-4.0.0 | 6.5703E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.46968E-05 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.4262 | ambiguous | 0.3678 | ambiguous | -1.344 | Destabilizing | 0.157 | N | 0.621 | neutral | None | None | None | None | N |
L/C | 0.5708 | likely_pathogenic | 0.5503 | ambiguous | -1.318 | Destabilizing | 0.968 | D | 0.721 | prob.delet. | None | None | None | None | N |
L/D | 0.9425 | likely_pathogenic | 0.9208 | pathogenic | 0.105 | Stabilizing | 0.726 | D | 0.803 | deleterious | None | None | None | None | N |
L/E | 0.7492 | likely_pathogenic | 0.6903 | pathogenic | 0.158 | Stabilizing | 0.726 | D | 0.783 | deleterious | None | None | None | None | N |
L/F | 0.1823 | likely_benign | 0.1663 | benign | -0.775 | Destabilizing | 0.567 | D | 0.655 | neutral | None | None | None | None | N |
L/G | 0.8191 | likely_pathogenic | 0.7769 | pathogenic | -1.673 | Destabilizing | 0.567 | D | 0.769 | deleterious | None | None | None | None | N |
L/H | 0.5095 | ambiguous | 0.4605 | ambiguous | -0.761 | Destabilizing | 0.968 | D | 0.781 | deleterious | None | None | None | None | N |
L/I | 0.1267 | likely_benign | 0.1109 | benign | -0.51 | Destabilizing | 0.001 | N | 0.415 | neutral | None | None | None | None | N |
L/K | 0.593 | likely_pathogenic | 0.5511 | ambiguous | -0.747 | Destabilizing | 0.567 | D | 0.753 | deleterious | None | None | None | None | N |
L/M | 0.1135 | likely_benign | 0.1016 | benign | -0.752 | Destabilizing | 0.02 | N | 0.541 | neutral | D | 0.522591834 | None | None | N |
L/N | 0.7905 | likely_pathogenic | 0.7469 | pathogenic | -0.744 | Destabilizing | 0.726 | D | 0.804 | deleterious | None | None | None | None | N |
L/P | 0.9778 | likely_pathogenic | 0.9721 | pathogenic | -0.757 | Destabilizing | 0.859 | D | 0.805 | deleterious | N | 0.492213696 | None | None | N |
L/Q | 0.3632 | ambiguous | 0.3205 | benign | -0.733 | Destabilizing | 0.497 | N | 0.782 | deleterious | N | 0.514086994 | None | None | N |
L/R | 0.5065 | ambiguous | 0.4737 | ambiguous | -0.403 | Destabilizing | 0.497 | N | 0.777 | deleterious | N | 0.495501234 | None | None | N |
L/S | 0.6144 | likely_pathogenic | 0.5446 | ambiguous | -1.521 | Destabilizing | 0.567 | D | 0.723 | prob.delet. | None | None | None | None | N |
L/T | 0.4686 | ambiguous | 0.4038 | ambiguous | -1.319 | Destabilizing | 0.272 | N | 0.685 | prob.neutral | None | None | None | None | N |
L/V | 0.1185 | likely_benign | 0.1038 | benign | -0.757 | Destabilizing | 0.004 | N | 0.331 | neutral | N | 0.42198491 | None | None | N |
L/W | 0.5379 | ambiguous | 0.5067 | ambiguous | -0.767 | Destabilizing | 0.968 | D | 0.759 | deleterious | None | None | None | None | N |
L/Y | 0.4955 | ambiguous | 0.4602 | ambiguous | -0.556 | Destabilizing | 0.726 | D | 0.738 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.