Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 28901 | 86926;86927;86928 | chr2:178559431;178559430;178559429 | chr2:179424158;179424157;179424156 |
N2AB | 27260 | 82003;82004;82005 | chr2:178559431;178559430;178559429 | chr2:179424158;179424157;179424156 |
N2A | 26333 | 79222;79223;79224 | chr2:178559431;178559430;178559429 | chr2:179424158;179424157;179424156 |
N2B | 19836 | 59731;59732;59733 | chr2:178559431;178559430;178559429 | chr2:179424158;179424157;179424156 |
Novex-1 | 19961 | 60106;60107;60108 | chr2:178559431;178559430;178559429 | chr2:179424158;179424157;179424156 |
Novex-2 | 20028 | 60307;60308;60309 | chr2:178559431;178559430;178559429 | chr2:179424158;179424157;179424156 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs757848764 | -0.06 | 1.0 | N | 0.73 | 0.335 | 0.613652031552 | gnomAD-2.1.1 | 1.21E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.58E-05 | None | 0 | None | 0 | 1.78E-05 | 0 |
R/C | rs757848764 | -0.06 | 1.0 | N | 0.73 | 0.335 | 0.613652031552 | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 4.78011E-04 |
R/C | rs757848764 | -0.06 | 1.0 | N | 0.73 | 0.335 | 0.613652031552 | gnomAD-4.0.0 | 1.23951E-05 | None | None | None | None | N | None | 4.0063E-05 | 1.66728E-05 | None | 0 | 8.91424E-05 | None | 0 | 0 | 6.78129E-06 | 1.09832E-05 | 4.80354E-05 |
R/G | rs757848764 | None | 1.0 | N | 0.611 | 0.275 | 0.543299242062 | gnomAD-4.0.0 | 6.84262E-07 | None | None | None | None | N | None | 0 | 2.23614E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/H | rs550229338 | -0.746 | 1.0 | N | 0.76 | 0.331 | 0.254761474806 | gnomAD-2.1.1 | 5.23E-05 | None | None | None | None | N | None | 0 | 2.9E-05 | None | 0 | 6.13908E-04 | None | 3.27E-05 | None | 0 | 0 | 0 |
R/H | rs550229338 | -0.746 | 1.0 | N | 0.76 | 0.331 | 0.254761474806 | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 5.78258E-04 | None | 0 | 0 | 0 | 0 | 0 |
R/H | rs550229338 | -0.746 | 1.0 | N | 0.76 | 0.331 | 0.254761474806 | 1000 genomes | 3.99361E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 2E-03 | 0 | None | None | None | 0 | None |
R/H | rs550229338 | -0.746 | 1.0 | N | 0.76 | 0.331 | 0.254761474806 | gnomAD-4.0.0 | 1.36333E-05 | None | None | None | None | N | None | 0 | 1.66656E-05 | None | 3.37883E-05 | 2.8979E-04 | None | 0 | 0 | 3.39066E-06 | 1.09827E-05 | 3.20133E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.4881 | ambiguous | 0.4824 | ambiguous | 0.099 | Stabilizing | 0.999 | D | 0.624 | neutral | None | None | None | None | N |
R/C | 0.1779 | likely_benign | 0.1663 | benign | -0.068 | Destabilizing | 1.0 | D | 0.73 | prob.delet. | N | 0.516518719 | None | None | N |
R/D | 0.7051 | likely_pathogenic | 0.7039 | pathogenic | -0.052 | Destabilizing | 1.0 | D | 0.689 | prob.neutral | None | None | None | None | N |
R/E | 0.5004 | ambiguous | 0.5059 | ambiguous | 0.016 | Stabilizing | 0.999 | D | 0.66 | neutral | None | None | None | None | N |
R/F | 0.6023 | likely_pathogenic | 0.5742 | pathogenic | -0.125 | Destabilizing | 1.0 | D | 0.703 | prob.neutral | None | None | None | None | N |
R/G | 0.2857 | likely_benign | 0.287 | benign | -0.096 | Destabilizing | 1.0 | D | 0.611 | neutral | N | 0.483310222 | None | None | N |
R/H | 0.1029 | likely_benign | 0.0888 | benign | -0.653 | Destabilizing | 1.0 | D | 0.76 | deleterious | N | 0.504608214 | None | None | N |
R/I | 0.3753 | ambiguous | 0.3828 | ambiguous | 0.575 | Stabilizing | 1.0 | D | 0.714 | prob.delet. | None | None | None | None | N |
R/K | 0.1203 | likely_benign | 0.1194 | benign | 0.042 | Stabilizing | 0.998 | D | 0.521 | neutral | None | None | None | None | N |
R/L | 0.3219 | likely_benign | 0.3055 | benign | 0.575 | Stabilizing | 1.0 | D | 0.611 | neutral | N | 0.518806876 | None | None | N |
R/M | 0.3645 | ambiguous | 0.3728 | ambiguous | 0.084 | Stabilizing | 1.0 | D | 0.745 | deleterious | None | None | None | None | N |
R/N | 0.5656 | likely_pathogenic | 0.5456 | ambiguous | 0.218 | Stabilizing | 1.0 | D | 0.737 | prob.delet. | None | None | None | None | N |
R/P | 0.8527 | likely_pathogenic | 0.8499 | pathogenic | 0.437 | Stabilizing | 1.0 | D | 0.683 | prob.neutral | N | 0.515035852 | None | None | N |
R/Q | 0.1223 | likely_benign | 0.1184 | benign | 0.157 | Stabilizing | 1.0 | D | 0.733 | prob.delet. | None | None | None | None | N |
R/S | 0.5126 | ambiguous | 0.4995 | ambiguous | -0.079 | Destabilizing | 1.0 | D | 0.694 | prob.neutral | N | 0.461548084 | None | None | N |
R/T | 0.3202 | likely_benign | 0.3257 | benign | 0.124 | Stabilizing | 1.0 | D | 0.687 | prob.neutral | None | None | None | None | N |
R/V | 0.4523 | ambiguous | 0.4492 | ambiguous | 0.437 | Stabilizing | 1.0 | D | 0.701 | prob.neutral | None | None | None | None | N |
R/W | 0.247 | likely_benign | 0.2417 | benign | -0.226 | Destabilizing | 1.0 | D | 0.748 | deleterious | None | None | None | None | N |
R/Y | 0.386 | ambiguous | 0.3644 | ambiguous | 0.198 | Stabilizing | 1.0 | D | 0.71 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.