Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 28922 | 86989;86990;86991 | chr2:178559368;178559367;178559366 | chr2:179424095;179424094;179424093 |
N2AB | 27281 | 82066;82067;82068 | chr2:178559368;178559367;178559366 | chr2:179424095;179424094;179424093 |
N2A | 26354 | 79285;79286;79287 | chr2:178559368;178559367;178559366 | chr2:179424095;179424094;179424093 |
N2B | 19857 | 59794;59795;59796 | chr2:178559368;178559367;178559366 | chr2:179424095;179424094;179424093 |
Novex-1 | 19982 | 60169;60170;60171 | chr2:178559368;178559367;178559366 | chr2:179424095;179424094;179424093 |
Novex-2 | 20049 | 60370;60371;60372 | chr2:178559368;178559367;178559366 | chr2:179424095;179424094;179424093 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
E/Q | rs1178384540 | -0.572 | 0.988 | N | 0.604 | 0.174 | 0.218845423259 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.89E-06 | 0 |
E/Q | rs1178384540 | -0.572 | 0.988 | N | 0.604 | 0.174 | 0.218845423259 | gnomAD-4.0.0 | 2.73807E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 3.59915E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
E/A | 0.3379 | likely_benign | 0.4237 | ambiguous | -0.765 | Destabilizing | 0.6 | D | 0.483 | neutral | N | 0.511379471 | None | None | N |
E/C | 0.8696 | likely_pathogenic | 0.915 | pathogenic | -0.799 | Destabilizing | 0.997 | D | 0.805 | deleterious | None | None | None | None | N |
E/D | 0.6246 | likely_pathogenic | 0.7092 | pathogenic | -1.379 | Destabilizing | 0.704 | D | 0.391 | neutral | N | 0.508564799 | None | None | N |
E/F | 0.9012 | likely_pathogenic | 0.9456 | pathogenic | -1.208 | Destabilizing | 0.963 | D | 0.833 | deleterious | None | None | None | None | N |
E/G | 0.4952 | ambiguous | 0.5971 | pathogenic | -1.066 | Destabilizing | 0.986 | D | 0.696 | prob.neutral | N | 0.490460544 | None | None | N |
E/H | 0.7966 | likely_pathogenic | 0.8755 | pathogenic | -1.452 | Destabilizing | 0.998 | D | 0.661 | neutral | None | None | None | None | N |
E/I | 0.4724 | ambiguous | 0.6016 | pathogenic | 0.043 | Stabilizing | 0.858 | D | 0.745 | deleterious | None | None | None | None | N |
E/K | 0.3316 | likely_benign | 0.4372 | ambiguous | -1.238 | Destabilizing | 0.918 | D | 0.422 | neutral | N | 0.519614952 | None | None | N |
E/L | 0.7171 | likely_pathogenic | 0.8248 | pathogenic | 0.043 | Stabilizing | 0.633 | D | 0.697 | prob.neutral | None | None | None | None | N |
E/M | 0.5934 | likely_pathogenic | 0.6919 | pathogenic | 0.485 | Stabilizing | 0.943 | D | 0.797 | deleterious | None | None | None | None | N |
E/N | 0.6859 | likely_pathogenic | 0.7984 | pathogenic | -1.335 | Destabilizing | 0.972 | D | 0.665 | neutral | None | None | None | None | N |
E/P | 0.9948 | likely_pathogenic | 0.9968 | pathogenic | -0.207 | Destabilizing | 0.917 | D | 0.793 | deleterious | None | None | None | None | N |
E/Q | 0.1809 | likely_benign | 0.2378 | benign | -1.135 | Destabilizing | 0.988 | D | 0.604 | neutral | N | 0.517209365 | None | None | N |
E/R | 0.5102 | ambiguous | 0.6209 | pathogenic | -1.279 | Destabilizing | 0.981 | D | 0.677 | prob.neutral | None | None | None | None | N |
E/S | 0.4316 | ambiguous | 0.5434 | ambiguous | -1.807 | Destabilizing | 0.889 | D | 0.473 | neutral | None | None | None | None | N |
E/T | 0.4734 | ambiguous | 0.5847 | pathogenic | -1.537 | Destabilizing | 0.951 | D | 0.701 | prob.neutral | None | None | None | None | N |
E/V | 0.2781 | likely_benign | 0.359 | ambiguous | -0.207 | Destabilizing | 0.013 | N | 0.391 | neutral | N | 0.450458724 | None | None | N |
E/W | 0.974 | likely_pathogenic | 0.9851 | pathogenic | -1.547 | Destabilizing | 0.999 | D | 0.788 | deleterious | None | None | None | None | N |
E/Y | 0.8809 | likely_pathogenic | 0.9318 | pathogenic | -1.125 | Destabilizing | 0.993 | D | 0.825 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.