Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 29142 | 87649;87650;87651 | chr2:178557930;178557929;178557928 | chr2:179422657;179422656;179422655 |
N2AB | 27501 | 82726;82727;82728 | chr2:178557930;178557929;178557928 | chr2:179422657;179422656;179422655 |
N2A | 26574 | 79945;79946;79947 | chr2:178557930;178557929;178557928 | chr2:179422657;179422656;179422655 |
N2B | 20077 | 60454;60455;60456 | chr2:178557930;178557929;178557928 | chr2:179422657;179422656;179422655 |
Novex-1 | 20202 | 60829;60830;60831 | chr2:178557930;178557929;178557928 | chr2:179422657;179422656;179422655 |
Novex-2 | 20269 | 61030;61031;61032 | chr2:178557930;178557929;178557928 | chr2:179422657;179422656;179422655 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | rs1196119784 | None | 0.019 | N | 0.361 | 0.072 | 0.137902524267 | gnomAD-2.1.1 | 3.18E-05 | None | None | None | None | N | None | 1.14784E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
T/A | rs1196119784 | None | 0.019 | N | 0.361 | 0.072 | 0.137902524267 | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 1.92753E-04 | None | 0 | 0 | 0 | 0 | 0 |
T/A | rs1196119784 | None | 0.019 | N | 0.361 | 0.072 | 0.137902524267 | gnomAD-4.0.0 | 4.05955E-06 | None | None | None | None | N | None | 1.74691E-05 | 0 | None | 0 | 1.13404E-04 | None | 0 | 0 | 2.40978E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | 0.0668 | likely_benign | 0.0714 | benign | -0.72 | Destabilizing | 0.019 | N | 0.361 | neutral | N | 0.474351517 | None | None | N |
T/C | 0.2285 | likely_benign | 0.2331 | benign | -0.429 | Destabilizing | 0.667 | D | 0.528 | neutral | None | None | None | None | N |
T/D | 0.3147 | likely_benign | 0.3378 | benign | -0.461 | Destabilizing | 0.055 | N | 0.448 | neutral | None | None | None | None | N |
T/E | 0.1937 | likely_benign | 0.2068 | benign | -0.416 | Destabilizing | None | N | 0.306 | neutral | None | None | None | None | N |
T/F | 0.2095 | likely_benign | 0.2303 | benign | -0.541 | Destabilizing | 0.497 | N | 0.657 | neutral | None | None | None | None | N |
T/G | 0.1648 | likely_benign | 0.1796 | benign | -1.037 | Destabilizing | 0.055 | N | 0.449 | neutral | None | None | None | None | N |
T/H | 0.2419 | likely_benign | 0.2475 | benign | -1.342 | Destabilizing | 0.667 | D | 0.593 | neutral | None | None | None | None | N |
T/I | 0.0949 | likely_benign | 0.1032 | benign | 0.048 | Stabilizing | 0.042 | N | 0.359 | neutral | N | 0.511445681 | None | None | N |
T/K | 0.1601 | likely_benign | 0.1652 | benign | -0.896 | Destabilizing | 0.055 | N | 0.429 | neutral | None | None | None | None | N |
T/L | 0.0818 | likely_benign | 0.0817 | benign | 0.048 | Stabilizing | None | N | 0.289 | neutral | None | None | None | None | N |
T/M | 0.0812 | likely_benign | 0.0824 | benign | 0.208 | Stabilizing | 0.497 | N | 0.537 | neutral | None | None | None | None | N |
T/N | 0.1223 | likely_benign | 0.1298 | benign | -0.897 | Destabilizing | 0.096 | N | 0.447 | neutral | N | 0.505925218 | None | None | N |
T/P | 0.3802 | ambiguous | 0.39 | ambiguous | -0.174 | Destabilizing | 0.301 | N | 0.537 | neutral | N | 0.457189909 | None | None | N |
T/Q | 0.1693 | likely_benign | 0.1719 | benign | -0.923 | Destabilizing | 0.011 | N | 0.33 | neutral | None | None | None | None | N |
T/R | 0.1374 | likely_benign | 0.1378 | benign | -0.787 | Destabilizing | 0.22 | N | 0.508 | neutral | None | None | None | None | N |
T/S | 0.0881 | likely_benign | 0.0945 | benign | -1.113 | Destabilizing | None | N | 0.275 | neutral | N | 0.432408894 | None | None | N |
T/V | 0.0755 | likely_benign | 0.0799 | benign | -0.174 | Destabilizing | None | N | 0.159 | neutral | None | None | None | None | N |
T/W | 0.5681 | likely_pathogenic | 0.5714 | pathogenic | -0.575 | Destabilizing | 0.958 | D | 0.631 | neutral | None | None | None | None | N |
T/Y | 0.2671 | likely_benign | 0.2788 | benign | -0.34 | Destabilizing | 0.667 | D | 0.665 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.