Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 2915 | 8968;8969;8970 | chr2:178769838;178769837;178769836 | chr2:179634565;179634564;179634563 |
N2AB | 2915 | 8968;8969;8970 | chr2:178769838;178769837;178769836 | chr2:179634565;179634564;179634563 |
N2A | 2915 | 8968;8969;8970 | chr2:178769838;178769837;178769836 | chr2:179634565;179634564;179634563 |
N2B | 2869 | 8830;8831;8832 | chr2:178769838;178769837;178769836 | chr2:179634565;179634564;179634563 |
Novex-1 | 2869 | 8830;8831;8832 | chr2:178769838;178769837;178769836 | chr2:179634565;179634564;179634563 |
Novex-2 | 2869 | 8830;8831;8832 | chr2:178769838;178769837;178769836 | chr2:179634565;179634564;179634563 |
Novex-3 | 2915 | 8968;8969;8970 | chr2:178769838;178769837;178769836 | chr2:179634565;179634564;179634563 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/Q | None | None | 1.0 | D | 0.743 | 0.764 | 0.847965046105 | gnomAD-4.0.0 | 6.84065E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.15931E-05 | 0 |
L/R | None | None | 1.0 | D | 0.757 | 0.754 | 0.849054655723 | gnomAD-4.0.0 | 6.84065E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99297E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.8646 | likely_pathogenic | 0.8375 | pathogenic | -2.237 | Highly Destabilizing | 0.999 | D | 0.646 | neutral | None | None | None | None | N |
L/C | 0.8016 | likely_pathogenic | 0.807 | pathogenic | -1.525 | Destabilizing | 1.0 | D | 0.708 | prob.delet. | None | None | None | None | N |
L/D | 0.9891 | likely_pathogenic | 0.9842 | pathogenic | -2.341 | Highly Destabilizing | 1.0 | D | 0.755 | deleterious | None | None | None | None | N |
L/E | 0.8325 | likely_pathogenic | 0.8026 | pathogenic | -2.203 | Highly Destabilizing | 1.0 | D | 0.765 | deleterious | None | None | None | None | N |
L/F | 0.2854 | likely_benign | 0.2751 | benign | -1.381 | Destabilizing | 1.0 | D | 0.643 | neutral | None | None | None | None | N |
L/G | 0.9567 | likely_pathogenic | 0.945 | pathogenic | -2.699 | Highly Destabilizing | 1.0 | D | 0.761 | deleterious | None | None | None | None | N |
L/H | 0.5836 | likely_pathogenic | 0.5777 | pathogenic | -2.082 | Highly Destabilizing | 1.0 | D | 0.756 | deleterious | None | None | None | None | N |
L/I | 0.2831 | likely_benign | 0.2399 | benign | -0.948 | Destabilizing | 0.999 | D | 0.48 | neutral | None | None | None | None | N |
L/K | 0.41 | ambiguous | 0.4418 | ambiguous | -1.635 | Destabilizing | 1.0 | D | 0.726 | prob.delet. | None | None | None | None | N |
L/M | 0.1846 | likely_benign | 0.1845 | benign | -0.854 | Destabilizing | 1.0 | D | 0.675 | neutral | D | 0.523862085 | None | None | N |
L/N | 0.9077 | likely_pathogenic | 0.8859 | pathogenic | -1.753 | Destabilizing | 1.0 | D | 0.761 | deleterious | None | None | None | None | N |
L/P | 0.9992 | likely_pathogenic | 0.9983 | pathogenic | -1.354 | Destabilizing | 1.0 | D | 0.763 | deleterious | D | 0.701601165 | None | None | N |
L/Q | 0.3735 | ambiguous | 0.3748 | ambiguous | -1.76 | Destabilizing | 1.0 | D | 0.743 | deleterious | D | 0.58236 | None | None | N |
L/R | 0.3644 | ambiguous | 0.3935 | ambiguous | -1.205 | Destabilizing | 1.0 | D | 0.757 | deleterious | D | 0.567455978 | None | None | N |
L/S | 0.8869 | likely_pathogenic | 0.8479 | pathogenic | -2.421 | Highly Destabilizing | 1.0 | D | 0.717 | prob.delet. | None | None | None | None | N |
L/T | 0.7611 | likely_pathogenic | 0.7075 | pathogenic | -2.156 | Highly Destabilizing | 1.0 | D | 0.75 | deleterious | None | None | None | None | N |
L/V | 0.278 | likely_benign | 0.2581 | benign | -1.354 | Destabilizing | 0.999 | D | 0.513 | neutral | D | 0.579141422 | None | None | N |
L/W | 0.5334 | ambiguous | 0.5307 | ambiguous | -1.696 | Destabilizing | 1.0 | D | 0.731 | prob.delet. | None | None | None | None | N |
L/Y | 0.5856 | likely_pathogenic | 0.5814 | pathogenic | -1.415 | Destabilizing | 1.0 | D | 0.745 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.