Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 29432 | 88519;88520;88521 | chr2:178556860;178556859;178556858 | chr2:179421587;179421586;179421585 |
N2AB | 27791 | 83596;83597;83598 | chr2:178556860;178556859;178556858 | chr2:179421587;179421586;179421585 |
N2A | 26864 | 80815;80816;80817 | chr2:178556860;178556859;178556858 | chr2:179421587;179421586;179421585 |
N2B | 20367 | 61324;61325;61326 | chr2:178556860;178556859;178556858 | chr2:179421587;179421586;179421585 |
Novex-1 | 20492 | 61699;61700;61701 | chr2:178556860;178556859;178556858 | chr2:179421587;179421586;179421585 |
Novex-2 | 20559 | 61900;61901;61902 | chr2:178556860;178556859;178556858 | chr2:179421587;179421586;179421585 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/V | rs775025065 | -0.268 | None | N | 0.06 | 0.058 | None | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.9E-06 | 0 |
I/V | rs775025065 | -0.268 | None | N | 0.06 | 0.058 | None | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
I/V | rs775025065 | -0.268 | None | N | 0.06 | 0.058 | None | gnomAD-4.0.0 | 5.57805E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 7.45884E-05 | 0 | 3.20236E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.204 | likely_benign | 0.1485 | benign | -1.248 | Destabilizing | 0.029 | N | 0.341 | neutral | None | None | None | None | N |
I/C | 0.5841 | likely_pathogenic | 0.521 | ambiguous | -0.806 | Destabilizing | 0.703 | D | 0.453 | neutral | None | None | None | None | N |
I/D | 0.6561 | likely_pathogenic | 0.5429 | ambiguous | -0.841 | Destabilizing | 0.703 | D | 0.646 | neutral | None | None | None | None | N |
I/E | 0.4271 | ambiguous | 0.3347 | benign | -0.913 | Destabilizing | 0.25 | N | 0.571 | neutral | None | None | None | None | N |
I/F | 0.1914 | likely_benign | 0.1445 | benign | -1.184 | Destabilizing | 0.468 | N | 0.384 | neutral | N | 0.445220689 | None | None | N |
I/G | 0.55 | ambiguous | 0.4429 | ambiguous | -1.475 | Destabilizing | 0.403 | N | 0.553 | neutral | None | None | None | None | N |
I/H | 0.425 | ambiguous | 0.3504 | ambiguous | -0.722 | Destabilizing | 0.878 | D | 0.535 | neutral | None | None | None | None | N |
I/K | 0.2301 | likely_benign | 0.1886 | benign | -0.666 | Destabilizing | 0.143 | N | 0.553 | neutral | None | None | None | None | N |
I/L | 0.1119 | likely_benign | 0.1008 | benign | -0.744 | Destabilizing | 0.022 | N | 0.225 | neutral | N | 0.42532542 | None | None | N |
I/M | 0.0866 | likely_benign | 0.0775 | benign | -0.475 | Destabilizing | 0.691 | D | 0.479 | neutral | N | 0.427059003 | None | None | N |
I/N | 0.2802 | likely_benign | 0.2149 | benign | -0.431 | Destabilizing | 0.641 | D | 0.641 | neutral | N | 0.445914122 | None | None | N |
I/P | 0.8575 | likely_pathogenic | 0.7949 | pathogenic | -0.879 | Destabilizing | 0.878 | D | 0.654 | prob.neutral | None | None | None | None | N |
I/Q | 0.2776 | likely_benign | 0.2366 | benign | -0.736 | Destabilizing | 0.538 | D | 0.664 | prob.neutral | None | None | None | None | N |
I/R | 0.177 | likely_benign | 0.1433 | benign | -0.021 | Destabilizing | 0.001 | N | 0.267 | neutral | None | None | None | None | N |
I/S | 0.2099 | likely_benign | 0.1589 | benign | -0.962 | Destabilizing | 0.201 | N | 0.521 | neutral | N | 0.415417857 | None | None | N |
I/T | 0.0994 | likely_benign | 0.077 | benign | -0.927 | Destabilizing | 0.094 | N | 0.425 | neutral | N | 0.382998794 | None | None | N |
I/V | 0.0714 | likely_benign | 0.064 | benign | -0.879 | Destabilizing | None | N | 0.06 | neutral | N | 0.382921437 | None | None | N |
I/W | 0.7493 | likely_pathogenic | 0.6915 | pathogenic | -1.169 | Destabilizing | 0.964 | D | 0.567 | neutral | None | None | None | None | N |
I/Y | 0.5516 | ambiguous | 0.4691 | ambiguous | -0.916 | Destabilizing | 0.703 | D | 0.587 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.