Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 29570 | 88933;88934;88935 | chr2:178554639;178554638;178554637 | chr2:179419366;179419365;179419364 |
N2AB | 27929 | 84010;84011;84012 | chr2:178554639;178554638;178554637 | chr2:179419366;179419365;179419364 |
N2A | 27002 | 81229;81230;81231 | chr2:178554639;178554638;178554637 | chr2:179419366;179419365;179419364 |
N2B | 20505 | 61738;61739;61740 | chr2:178554639;178554638;178554637 | chr2:179419366;179419365;179419364 |
Novex-1 | 20630 | 62113;62114;62115 | chr2:178554639;178554638;178554637 | chr2:179419366;179419365;179419364 |
Novex-2 | 20697 | 62314;62315;62316 | chr2:178554639;178554638;178554637 | chr2:179419366;179419365;179419364 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/L | rs139506970 | None | 0.58 | N | 0.418 | 0.061 | 0.549964211903 | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | N | None | 0 | 1.30993E-04 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
I/L | rs139506970 | None | 0.58 | N | 0.418 | 0.061 | 0.549964211903 | gnomAD-4.0.0 | 1.85903E-06 | None | None | None | None | N | None | 0 | 5.00067E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
I/T | rs965795447 | -3.327 | 0.939 | N | 0.675 | 0.391 | 0.680584855444 | gnomAD-2.1.1 | 6.37E-05 | None | None | None | None | N | None | 2.29463E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
I/T | rs965795447 | -3.327 | 0.939 | N | 0.675 | 0.391 | 0.680584855444 | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 7.24E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
I/T | rs965795447 | -3.327 | 0.939 | N | 0.675 | 0.391 | 0.680584855444 | gnomAD-4.0.0 | 4.06004E-06 | None | None | None | None | N | None | 6.99252E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
I/V | rs139506970 | -2.338 | 0.02 | N | 0.233 | 0.041 | None | gnomAD-2.1.1 | 8.24753E-04 | None | None | None | None | N | None | 8.63565E-03 | 1.41411E-04 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 1.01613E-04 | 4.20994E-04 |
I/V | rs139506970 | -2.338 | 0.02 | N | 0.233 | 0.041 | None | gnomAD-3.1.2 | 2.43258E-03 | None | None | None | None | N | None | 8.28062E-03 | 8.51454E-04 | 0 | 0 | 0 | None | 0 | 0 | 1.32326E-04 | 2.07297E-04 | 1.91205E-03 |
I/V | rs139506970 | -2.338 | 0.02 | N | 0.233 | 0.041 | None | 1000 genomes | 3.39457E-03 | None | None | None | None | N | None | 1.21E-02 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
I/V | rs139506970 | -2.338 | 0.02 | N | 0.233 | 0.041 | None | gnomAD-4.0.0 | 5.00663E-04 | None | None | None | None | N | None | 8.45085E-03 | 3.9992E-04 | None | 0 | 0 | None | 0 | 2.30947E-03 | 6.78065E-05 | 3.29388E-05 | 8.48217E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.3757 | ambiguous | 0.4313 | ambiguous | -2.759 | Highly Destabilizing | 0.91 | D | 0.649 | neutral | None | None | None | None | N |
I/C | 0.7295 | likely_pathogenic | 0.7701 | pathogenic | -1.992 | Destabilizing | 0.999 | D | 0.657 | neutral | None | None | None | None | N |
I/D | 0.9188 | likely_pathogenic | 0.936 | pathogenic | -3.454 | Highly Destabilizing | 0.998 | D | 0.734 | prob.delet. | None | None | None | None | N |
I/E | 0.7936 | likely_pathogenic | 0.8096 | pathogenic | -3.276 | Highly Destabilizing | 0.993 | D | 0.719 | prob.delet. | None | None | None | None | N |
I/F | 0.2979 | likely_benign | 0.3466 | ambiguous | -1.671 | Destabilizing | 0.991 | D | 0.703 | prob.neutral | N | 0.499317038 | None | None | N |
I/G | 0.8539 | likely_pathogenic | 0.8926 | pathogenic | -3.221 | Highly Destabilizing | 0.993 | D | 0.725 | prob.delet. | None | None | None | None | N |
I/H | 0.6904 | likely_pathogenic | 0.7439 | pathogenic | -2.714 | Highly Destabilizing | 0.999 | D | 0.721 | prob.delet. | None | None | None | None | N |
I/K | 0.6228 | likely_pathogenic | 0.6584 | pathogenic | -2.272 | Highly Destabilizing | 0.993 | D | 0.715 | prob.delet. | None | None | None | None | N |
I/L | 0.1653 | likely_benign | 0.1716 | benign | -1.419 | Destabilizing | 0.58 | D | 0.418 | neutral | N | 0.492524352 | None | None | N |
I/M | 0.1385 | likely_benign | 0.1481 | benign | -1.282 | Destabilizing | 0.991 | D | 0.677 | prob.neutral | N | 0.466760429 | None | None | N |
I/N | 0.5925 | likely_pathogenic | 0.6412 | pathogenic | -2.545 | Highly Destabilizing | 0.997 | D | 0.741 | deleterious | N | 0.49810353 | None | None | N |
I/P | 0.9866 | likely_pathogenic | 0.9903 | pathogenic | -1.851 | Destabilizing | 0.998 | D | 0.745 | deleterious | None | None | None | None | N |
I/Q | 0.6585 | likely_pathogenic | 0.6893 | pathogenic | -2.471 | Highly Destabilizing | 0.998 | D | 0.727 | prob.delet. | None | None | None | None | N |
I/R | 0.4896 | ambiguous | 0.542 | ambiguous | -1.81 | Destabilizing | 0.993 | D | 0.739 | prob.delet. | None | None | None | None | N |
I/S | 0.4449 | ambiguous | 0.495 | ambiguous | -3.091 | Highly Destabilizing | 0.991 | D | 0.677 | prob.neutral | N | 0.501007762 | None | None | N |
I/T | 0.1546 | likely_benign | 0.1811 | benign | -2.805 | Highly Destabilizing | 0.939 | D | 0.675 | prob.neutral | N | 0.422144333 | None | None | N |
I/V | 0.0638 | likely_benign | 0.0671 | benign | -1.851 | Destabilizing | 0.02 | N | 0.233 | neutral | N | 0.427686226 | None | None | N |
I/W | 0.8847 | likely_pathogenic | 0.9184 | pathogenic | -2.16 | Highly Destabilizing | 0.999 | D | 0.705 | prob.neutral | None | None | None | None | N |
I/Y | 0.6971 | likely_pathogenic | 0.7493 | pathogenic | -1.956 | Destabilizing | 0.998 | D | 0.655 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.