Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 29590 | 88993;88994;88995 | chr2:178554579;178554578;178554577 | chr2:179419306;179419305;179419304 |
N2AB | 27949 | 84070;84071;84072 | chr2:178554579;178554578;178554577 | chr2:179419306;179419305;179419304 |
N2A | 27022 | 81289;81290;81291 | chr2:178554579;178554578;178554577 | chr2:179419306;179419305;179419304 |
N2B | 20525 | 61798;61799;61800 | chr2:178554579;178554578;178554577 | chr2:179419306;179419305;179419304 |
Novex-1 | 20650 | 62173;62174;62175 | chr2:178554579;178554578;178554577 | chr2:179419306;179419305;179419304 |
Novex-2 | 20717 | 62374;62375;62376 | chr2:178554579;178554578;178554577 | chr2:179419306;179419305;179419304 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
E/D | rs879152203 | -0.316 | 0.002 | N | 0.125 | 0.069 | 0.154104182512 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.88E-06 | 0 |
E/D | rs879152203 | -0.316 | 0.002 | N | 0.125 | 0.069 | 0.154104182512 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
E/D | rs879152203 | -0.316 | 0.002 | N | 0.125 | 0.069 | 0.154104182512 | gnomAD-4.0.0 | 1.05347E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.44086E-05 | 0 | 0 |
E/Q | rs72648236 | -0.202 | 0.891 | N | 0.401 | 0.256 | 0.284150004643 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.88E-06 | 0 |
E/Q | rs72648236 | -0.202 | 0.891 | N | 0.401 | 0.256 | 0.284150004643 | Begay (2015) | None | DCM | comp het with R14640C | None | None | N | WGS prioritisation; filtering with ANNOVAR; co-segregates within 2-generation family (n = 2, 2 affected (total 3)) | None | None | None | None | None | None | None | None | None | None | None |
E/Q | rs72648236 | -0.202 | 0.891 | N | 0.401 | 0.256 | 0.284150004643 | gnomAD-4.0.0 | 1.59104E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.85778E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
E/A | 0.1352 | likely_benign | 0.1561 | benign | -0.218 | Destabilizing | 0.454 | N | 0.385 | neutral | N | 0.432460115 | None | None | N |
E/C | 0.8508 | likely_pathogenic | 0.8654 | pathogenic | -0.45 | Destabilizing | 0.998 | D | 0.473 | neutral | None | None | None | None | N |
E/D | 0.0785 | likely_benign | 0.0815 | benign | -0.524 | Destabilizing | 0.002 | N | 0.125 | neutral | N | 0.372953238 | None | None | N |
E/F | 0.8064 | likely_pathogenic | 0.8524 | pathogenic | 0.222 | Stabilizing | 0.991 | D | 0.436 | neutral | None | None | None | None | N |
E/G | 0.1259 | likely_benign | 0.1498 | benign | -0.46 | Destabilizing | 0.012 | N | 0.265 | neutral | N | 0.432558902 | None | None | N |
E/H | 0.4541 | ambiguous | 0.5015 | ambiguous | 0.679 | Stabilizing | 0.991 | D | 0.385 | neutral | None | None | None | None | N |
E/I | 0.5139 | ambiguous | 0.5723 | pathogenic | 0.405 | Stabilizing | 0.991 | D | 0.439 | neutral | None | None | None | None | N |
E/K | 0.1712 | likely_benign | 0.1945 | benign | 0.134 | Stabilizing | 0.801 | D | 0.369 | neutral | N | 0.438906084 | None | None | N |
E/L | 0.5108 | ambiguous | 0.5639 | ambiguous | 0.405 | Stabilizing | 0.974 | D | 0.42 | neutral | None | None | None | None | N |
E/M | 0.5331 | ambiguous | 0.5872 | pathogenic | 0.16 | Stabilizing | 0.998 | D | 0.427 | neutral | None | None | None | None | N |
E/N | 0.1641 | likely_benign | 0.1871 | benign | -0.427 | Destabilizing | 0.842 | D | 0.333 | neutral | None | None | None | None | N |
E/P | 0.7519 | likely_pathogenic | 0.7748 | pathogenic | 0.217 | Stabilizing | 0.991 | D | 0.414 | neutral | None | None | None | None | N |
E/Q | 0.1587 | likely_benign | 0.1732 | benign | -0.326 | Destabilizing | 0.891 | D | 0.401 | neutral | N | 0.434134983 | None | None | N |
E/R | 0.3218 | likely_benign | 0.3551 | ambiguous | 0.576 | Stabilizing | 0.974 | D | 0.394 | neutral | None | None | None | None | N |
E/S | 0.1584 | likely_benign | 0.1785 | benign | -0.586 | Destabilizing | 0.842 | D | 0.344 | neutral | None | None | None | None | N |
E/T | 0.1894 | likely_benign | 0.2193 | benign | -0.371 | Destabilizing | 0.915 | D | 0.397 | neutral | None | None | None | None | N |
E/V | 0.2942 | likely_benign | 0.3427 | ambiguous | 0.217 | Stabilizing | 0.966 | D | 0.415 | neutral | N | 0.424323421 | None | None | N |
E/W | 0.9251 | likely_pathogenic | 0.9438 | pathogenic | 0.411 | Stabilizing | 0.998 | D | 0.55 | neutral | None | None | None | None | N |
E/Y | 0.632 | likely_pathogenic | 0.6903 | pathogenic | 0.478 | Stabilizing | 0.991 | D | 0.433 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.