Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 29689 | 89290;89291;89292 | chr2:178554046;178554045;178554044 | chr2:179418773;179418772;179418771 |
N2AB | 28048 | 84367;84368;84369 | chr2:178554046;178554045;178554044 | chr2:179418773;179418772;179418771 |
N2A | 27121 | 81586;81587;81588 | chr2:178554046;178554045;178554044 | chr2:179418773;179418772;179418771 |
N2B | 20624 | 62095;62096;62097 | chr2:178554046;178554045;178554044 | chr2:179418773;179418772;179418771 |
Novex-1 | 20749 | 62470;62471;62472 | chr2:178554046;178554045;178554044 | chr2:179418773;179418772;179418771 |
Novex-2 | 20816 | 62671;62672;62673 | chr2:178554046;178554045;178554044 | chr2:179418773;179418772;179418771 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs781635476 | -0.111 | 1.0 | N | 0.747 | 0.384 | 0.591526896791 | gnomAD-2.1.1 | 8.05E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 1.78E-05 | 0 |
R/C | rs781635476 | -0.111 | 1.0 | N | 0.747 | 0.384 | 0.591526896791 | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | N | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/C | rs781635476 | -0.111 | 1.0 | N | 0.747 | 0.384 | 0.591526896791 | gnomAD-4.0.0 | 1.42536E-05 | None | None | None | None | N | None | 2.67001E-05 | 5.00217E-05 | None | 0 | 2.22866E-05 | None | 0 | 0 | 1.27138E-05 | 0 | 3.20236E-05 |
R/G | rs781635476 | None | 1.0 | N | 0.645 | 0.345 | 0.475971816791 | gnomAD-4.0.0 | 6.8422E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.51927E-05 | None | 0 | 0 | 0 | 0 | 0 |
R/H | rs368634670 | -0.57 | 1.0 | N | 0.791 | 0.304 | None | gnomAD-2.1.1 | 3.57E-05 | None | None | None | None | N | None | 1.65358E-04 | 2.83E-05 | None | 0 | 0 | None | 0 | None | 0 | 3.91E-05 | 0 |
R/H | rs368634670 | -0.57 | 1.0 | N | 0.791 | 0.304 | None | gnomAD-3.1.2 | 1.11732E-04 | None | None | None | None | N | None | 2.89645E-04 | 0 | 0 | 0 | 0 | None | 0 | 0 | 7.35E-05 | 0 | 0 |
R/H | rs368634670 | -0.57 | 1.0 | N | 0.791 | 0.304 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/H | rs368634670 | -0.57 | 1.0 | N | 0.791 | 0.304 | None | gnomAD-4.0.0 | 4.39954E-05 | None | None | None | None | N | None | 1.99936E-04 | 3.33289E-05 | None | 0 | 0 | None | 0 | 0 | 4.49223E-05 | 1.09796E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.5473 | ambiguous | 0.6582 | pathogenic | -0.02 | Destabilizing | 0.999 | D | 0.656 | neutral | None | None | None | None | N |
R/C | 0.2684 | likely_benign | 0.3266 | benign | -0.253 | Destabilizing | 1.0 | D | 0.747 | deleterious | N | 0.489726529 | None | None | N |
R/D | 0.8099 | likely_pathogenic | 0.8749 | pathogenic | -0.161 | Destabilizing | 1.0 | D | 0.717 | prob.delet. | None | None | None | None | N |
R/E | 0.5783 | likely_pathogenic | 0.6811 | pathogenic | -0.123 | Destabilizing | 0.999 | D | 0.682 | prob.neutral | None | None | None | None | N |
R/F | 0.7105 | likely_pathogenic | 0.7832 | pathogenic | -0.353 | Destabilizing | 1.0 | D | 0.725 | prob.delet. | None | None | None | None | N |
R/G | 0.3523 | ambiguous | 0.4706 | ambiguous | -0.16 | Destabilizing | 1.0 | D | 0.645 | neutral | N | 0.516921364 | None | None | N |
R/H | 0.1606 | likely_benign | 0.1904 | benign | -0.585 | Destabilizing | 1.0 | D | 0.791 | deleterious | N | 0.486579814 | None | None | N |
R/I | 0.4903 | ambiguous | 0.5656 | pathogenic | 0.301 | Stabilizing | 1.0 | D | 0.727 | prob.delet. | None | None | None | None | N |
R/K | 0.1477 | likely_benign | 0.1657 | benign | -0.128 | Destabilizing | 0.998 | D | 0.553 | neutral | None | None | None | None | N |
R/L | 0.4232 | ambiguous | 0.5036 | ambiguous | 0.301 | Stabilizing | 1.0 | D | 0.645 | neutral | N | 0.485657094 | None | None | N |
R/M | 0.48 | ambiguous | 0.554 | ambiguous | -0.056 | Destabilizing | 1.0 | D | 0.757 | deleterious | None | None | None | None | N |
R/N | 0.7357 | likely_pathogenic | 0.81 | pathogenic | 0.015 | Stabilizing | 1.0 | D | 0.76 | deleterious | None | None | None | None | N |
R/P | 0.5492 | ambiguous | 0.6604 | pathogenic | 0.212 | Stabilizing | 1.0 | D | 0.705 | prob.neutral | N | 0.444501118 | None | None | N |
R/Q | 0.1589 | likely_benign | 0.191 | benign | -0.069 | Destabilizing | 1.0 | D | 0.748 | deleterious | None | None | None | None | N |
R/S | 0.6365 | likely_pathogenic | 0.7365 | pathogenic | -0.262 | Destabilizing | 1.0 | D | 0.705 | prob.neutral | N | 0.435110844 | None | None | N |
R/T | 0.3718 | ambiguous | 0.4586 | ambiguous | -0.115 | Destabilizing | 1.0 | D | 0.703 | prob.neutral | None | None | None | None | N |
R/V | 0.5577 | ambiguous | 0.637 | pathogenic | 0.212 | Stabilizing | 1.0 | D | 0.714 | prob.delet. | None | None | None | None | N |
R/W | 0.2184 | likely_benign | 0.286 | benign | -0.49 | Destabilizing | 1.0 | D | 0.768 | deleterious | None | None | None | None | N |
R/Y | 0.5096 | ambiguous | 0.589 | pathogenic | -0.079 | Destabilizing | 1.0 | D | 0.729 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.