Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 29830 | 89713;89714;89715 | chr2:178553517;178553516;178553515 | chr2:179418244;179418243;179418242 |
N2AB | 28189 | 84790;84791;84792 | chr2:178553517;178553516;178553515 | chr2:179418244;179418243;179418242 |
N2A | 27262 | 82009;82010;82011 | chr2:178553517;178553516;178553515 | chr2:179418244;179418243;179418242 |
N2B | 20765 | 62518;62519;62520 | chr2:178553517;178553516;178553515 | chr2:179418244;179418243;179418242 |
Novex-1 | 20890 | 62893;62894;62895 | chr2:178553517;178553516;178553515 | chr2:179418244;179418243;179418242 |
Novex-2 | 20957 | 63094;63095;63096 | chr2:178553517;178553516;178553515 | chr2:179418244;179418243;179418242 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/T | rs183476312 | -1.908 | 0.891 | N | 0.792 | 0.151 | None | gnomAD-2.1.1 | 4.06E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.57E-05 | None | 0 | None | 0 | 0 | 0 |
A/T | rs183476312 | -1.908 | 0.891 | N | 0.792 | 0.151 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 1E-03 | 0 | None | None | None | 0 | None |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/C | 0.6713 | likely_pathogenic | 0.7147 | pathogenic | -2.131 | Highly Destabilizing | 0.996 | D | 0.81 | deleterious | None | None | None | None | N |
A/D | 0.981 | likely_pathogenic | 0.9828 | pathogenic | -2.622 | Highly Destabilizing | 0.891 | D | 0.821 | deleterious | N | 0.506803599 | None | None | N |
A/E | 0.9508 | likely_pathogenic | 0.9554 | pathogenic | -2.511 | Highly Destabilizing | 0.916 | D | 0.777 | deleterious | None | None | None | None | N |
A/F | 0.9578 | likely_pathogenic | 0.9617 | pathogenic | -1.091 | Destabilizing | 0.996 | D | 0.819 | deleterious | None | None | None | None | N |
A/G | 0.4112 | ambiguous | 0.4196 | ambiguous | -1.54 | Destabilizing | 0.7 | D | 0.575 | neutral | N | 0.494686825 | None | None | N |
A/H | 0.9851 | likely_pathogenic | 0.9883 | pathogenic | -1.569 | Destabilizing | 0.996 | D | 0.817 | deleterious | None | None | None | None | N |
A/I | 0.6611 | likely_pathogenic | 0.7024 | pathogenic | -0.338 | Destabilizing | 0.956 | D | 0.848 | deleterious | None | None | None | None | N |
A/K | 0.9875 | likely_pathogenic | 0.9892 | pathogenic | -1.374 | Destabilizing | 0.916 | D | 0.781 | deleterious | None | None | None | None | N |
A/L | 0.6213 | likely_pathogenic | 0.6366 | pathogenic | -0.338 | Destabilizing | 0.755 | D | 0.805 | deleterious | None | None | None | None | N |
A/M | 0.7413 | likely_pathogenic | 0.7475 | pathogenic | -0.877 | Destabilizing | 0.996 | D | 0.845 | deleterious | None | None | None | None | N |
A/N | 0.9272 | likely_pathogenic | 0.9353 | pathogenic | -1.661 | Destabilizing | 0.956 | D | 0.815 | deleterious | None | None | None | None | N |
A/P | 0.2139 | likely_benign | 0.285 | benign | -0.587 | Destabilizing | 0.017 | N | 0.429 | neutral | N | 0.493601787 | None | None | N |
A/Q | 0.9401 | likely_pathogenic | 0.9465 | pathogenic | -1.684 | Destabilizing | 0.956 | D | 0.839 | deleterious | None | None | None | None | N |
A/R | 0.9724 | likely_pathogenic | 0.9739 | pathogenic | -1.228 | Destabilizing | 0.956 | D | 0.848 | deleterious | None | None | None | None | N |
A/S | 0.2813 | likely_benign | 0.3131 | benign | -2.043 | Highly Destabilizing | 0.7 | D | 0.603 | neutral | N | 0.505282662 | None | None | N |
A/T | 0.3575 | ambiguous | 0.3682 | ambiguous | -1.823 | Destabilizing | 0.891 | D | 0.792 | deleterious | N | 0.470542183 | None | None | N |
A/V | 0.2964 | likely_benign | 0.3307 | benign | -0.587 | Destabilizing | 0.7 | D | 0.645 | neutral | N | 0.479090907 | None | None | N |
A/W | 0.9944 | likely_pathogenic | 0.995 | pathogenic | -1.551 | Destabilizing | 0.996 | D | 0.803 | deleterious | None | None | None | None | N |
A/Y | 0.9812 | likely_pathogenic | 0.9834 | pathogenic | -1.094 | Destabilizing | 0.996 | D | 0.83 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.