Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 30172 | 90739;90740;90741 | chr2:178552386;178552385;178552384 | chr2:179417113;179417112;179417111 |
N2AB | 28531 | 85816;85817;85818 | chr2:178552386;178552385;178552384 | chr2:179417113;179417112;179417111 |
N2A | 27604 | 83035;83036;83037 | chr2:178552386;178552385;178552384 | chr2:179417113;179417112;179417111 |
N2B | 21107 | 63544;63545;63546 | chr2:178552386;178552385;178552384 | chr2:179417113;179417112;179417111 |
Novex-1 | 21232 | 63919;63920;63921 | chr2:178552386;178552385;178552384 | chr2:179417113;179417112;179417111 |
Novex-2 | 21299 | 64120;64121;64122 | chr2:178552386;178552385;178552384 | chr2:179417113;179417112;179417111 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/M | rs1392178250 | -0.785 | 0.983 | N | 0.612 | 0.527 | 0.593458155424 | gnomAD-2.1.1 | 3.18E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 6.48E-05 | 0 |
L/P | None | None | 0.994 | D | 0.792 | 0.765 | 0.894442926721 | gnomAD-4.0.0 | 1.39005E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.82008E-06 | 0 | 0 |
L/R | None | None | 0.983 | D | 0.767 | 0.82 | 0.87732752342 | gnomAD-4.0.0 | 6.95025E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 1.68651E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.8272 | likely_pathogenic | 0.8004 | pathogenic | -2.447 | Highly Destabilizing | 0.845 | D | 0.476 | neutral | None | None | None | None | N |
L/C | 0.851 | likely_pathogenic | 0.8398 | pathogenic | -1.58 | Destabilizing | 0.999 | D | 0.68 | prob.neutral | None | None | None | None | N |
L/D | 0.9963 | likely_pathogenic | 0.9949 | pathogenic | -2.815 | Highly Destabilizing | 0.996 | D | 0.793 | deleterious | None | None | None | None | N |
L/E | 0.9638 | likely_pathogenic | 0.955 | pathogenic | -2.593 | Highly Destabilizing | 0.987 | D | 0.782 | deleterious | None | None | None | None | N |
L/F | 0.5685 | likely_pathogenic | 0.4939 | ambiguous | -1.548 | Destabilizing | 0.073 | N | 0.349 | neutral | None | None | None | None | N |
L/G | 0.974 | likely_pathogenic | 0.967 | pathogenic | -2.95 | Highly Destabilizing | 0.987 | D | 0.766 | deleterious | None | None | None | None | N |
L/H | 0.9514 | likely_pathogenic | 0.937 | pathogenic | -2.293 | Highly Destabilizing | 0.999 | D | 0.776 | deleterious | None | None | None | None | N |
L/I | 0.1544 | likely_benign | 0.1468 | benign | -0.994 | Destabilizing | 0.653 | D | 0.447 | neutral | None | None | None | None | N |
L/K | 0.9526 | likely_pathogenic | 0.9442 | pathogenic | -1.972 | Destabilizing | 0.987 | D | 0.739 | prob.delet. | None | None | None | None | N |
L/M | 0.2648 | likely_benign | 0.246 | benign | -0.819 | Destabilizing | 0.983 | D | 0.612 | neutral | N | 0.516494286 | None | None | N |
L/N | 0.9783 | likely_pathogenic | 0.9719 | pathogenic | -2.301 | Highly Destabilizing | 0.996 | D | 0.787 | deleterious | None | None | None | None | N |
L/P | 0.9596 | likely_pathogenic | 0.9513 | pathogenic | -1.461 | Destabilizing | 0.994 | D | 0.792 | deleterious | D | 0.525243699 | None | None | N |
L/Q | 0.8684 | likely_pathogenic | 0.8439 | pathogenic | -2.188 | Highly Destabilizing | 0.994 | D | 0.759 | deleterious | D | 0.529282624 | None | None | N |
L/R | 0.9288 | likely_pathogenic | 0.9206 | pathogenic | -1.686 | Destabilizing | 0.983 | D | 0.767 | deleterious | D | 0.540385439 | None | None | N |
L/S | 0.9543 | likely_pathogenic | 0.9404 | pathogenic | -2.927 | Highly Destabilizing | 0.975 | D | 0.729 | prob.delet. | None | None | None | None | N |
L/T | 0.8641 | likely_pathogenic | 0.843 | pathogenic | -2.56 | Highly Destabilizing | 0.975 | D | 0.63 | neutral | None | None | None | None | N |
L/V | 0.1596 | likely_benign | 0.1557 | benign | -1.461 | Destabilizing | 0.025 | N | 0.355 | neutral | D | 0.527560511 | None | None | N |
L/W | 0.8991 | likely_pathogenic | 0.8772 | pathogenic | -1.881 | Destabilizing | 0.999 | D | 0.747 | deleterious | None | None | None | None | N |
L/Y | 0.9156 | likely_pathogenic | 0.8918 | pathogenic | -1.578 | Destabilizing | 0.95 | D | 0.678 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.