Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 31071 | 93436;93437;93438 | chr2:178548415;178548414;178548413 | chr2:179413142;179413141;179413140 |
N2AB | 29430 | 88513;88514;88515 | chr2:178548415;178548414;178548413 | chr2:179413142;179413141;179413140 |
N2A | 28503 | 85732;85733;85734 | chr2:178548415;178548414;178548413 | chr2:179413142;179413141;179413140 |
N2B | 22006 | 66241;66242;66243 | chr2:178548415;178548414;178548413 | chr2:179413142;179413141;179413140 |
Novex-1 | 22131 | 66616;66617;66618 | chr2:178548415;178548414;178548413 | chr2:179413142;179413141;179413140 |
Novex-2 | 22198 | 66817;66818;66819 | chr2:178548415;178548414;178548413 | chr2:179413142;179413141;179413140 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | rs1321544592 | -0.168 | None | N | 0.075 | 0.093 | 0.170165803431 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 5.57E-05 | None | 0 | None | 0 | 0 | 0 |
T/A | rs1321544592 | -0.168 | None | N | 0.075 | 0.093 | 0.170165803431 | gnomAD-4.0.0 | 1.59114E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.85804E-06 | 0 | 0 |
T/I | rs780080115 | None | None | D | 0.156 | 0.156 | None | gnomAD-4.0.0 | 1.20032E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.3125E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | 0.072 | likely_benign | 0.0754 | benign | -0.295 | Destabilizing | None | N | 0.075 | neutral | N | 0.489257547 | None | None | I |
T/C | 0.3331 | likely_benign | 0.3787 | ambiguous | -0.331 | Destabilizing | 0.824 | D | 0.314 | neutral | None | None | None | None | I |
T/D | 0.4506 | ambiguous | 0.4795 | ambiguous | 0.183 | Stabilizing | 0.149 | N | 0.344 | neutral | None | None | None | None | I |
T/E | 0.3737 | ambiguous | 0.4069 | ambiguous | 0.11 | Stabilizing | 0.149 | N | 0.276 | neutral | None | None | None | None | I |
T/F | 0.2084 | likely_benign | 0.2272 | benign | -0.771 | Destabilizing | 0.38 | N | 0.323 | neutral | None | None | None | None | I |
T/G | 0.1464 | likely_benign | 0.1551 | benign | -0.422 | Destabilizing | 0.035 | N | 0.265 | neutral | None | None | None | None | I |
T/H | 0.2338 | likely_benign | 0.2482 | benign | -0.6 | Destabilizing | 0.935 | D | 0.277 | neutral | None | None | None | None | I |
T/I | 0.1134 | likely_benign | 0.129 | benign | -0.083 | Destabilizing | None | N | 0.156 | neutral | D | 0.526295782 | None | None | I |
T/K | 0.2949 | likely_benign | 0.3343 | benign | -0.382 | Destabilizing | 0.149 | N | 0.291 | neutral | None | None | None | None | I |
T/L | 0.0746 | likely_benign | 0.0821 | benign | -0.083 | Destabilizing | 0.012 | N | 0.316 | neutral | None | None | None | None | I |
T/M | 0.0855 | likely_benign | 0.0937 | benign | -0.07 | Destabilizing | 0.38 | N | 0.319 | neutral | None | None | None | None | I |
T/N | 0.0998 | likely_benign | 0.1019 | benign | -0.179 | Destabilizing | 0.117 | N | 0.273 | neutral | N | 0.443869187 | None | None | I |
T/P | 0.058 | likely_benign | 0.0603 | benign | -0.126 | Destabilizing | 0.484 | N | 0.344 | neutral | N | 0.449584438 | None | None | I |
T/Q | 0.2245 | likely_benign | 0.2402 | benign | -0.379 | Destabilizing | 0.555 | D | 0.345 | neutral | None | None | None | None | I |
T/R | 0.2738 | likely_benign | 0.3192 | benign | -0.079 | Destabilizing | 0.38 | N | 0.357 | neutral | None | None | None | None | I |
T/S | 0.0819 | likely_benign | 0.0828 | benign | -0.388 | Destabilizing | 0.002 | N | 0.073 | neutral | N | 0.412276843 | None | None | I |
T/V | 0.1025 | likely_benign | 0.1099 | benign | -0.126 | Destabilizing | 0.012 | N | 0.259 | neutral | None | None | None | None | I |
T/W | 0.567 | likely_pathogenic | 0.639 | pathogenic | -0.804 | Destabilizing | 0.935 | D | 0.33 | neutral | None | None | None | None | I |
T/Y | 0.2736 | likely_benign | 0.302 | benign | -0.513 | Destabilizing | 0.555 | D | 0.305 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.