Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 31072 | 93439;93440;93441 | chr2:178548412;178548411;178548410 | chr2:179413139;179413138;179413137 |
N2AB | 29431 | 88516;88517;88518 | chr2:178548412;178548411;178548410 | chr2:179413139;179413138;179413137 |
N2A | 28504 | 85735;85736;85737 | chr2:178548412;178548411;178548410 | chr2:179413139;179413138;179413137 |
N2B | 22007 | 66244;66245;66246 | chr2:178548412;178548411;178548410 | chr2:179413139;179413138;179413137 |
Novex-1 | 22132 | 66619;66620;66621 | chr2:178548412;178548411;178548410 | chr2:179413139;179413138;179413137 |
Novex-2 | 22199 | 66820;66821;66822 | chr2:178548412;178548411;178548410 | chr2:179413139;179413138;179413137 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs368932767 | 0.019 | 1.0 | N | 0.639 | 0.422 | None | gnomAD-2.1.1 | 5.37E-05 | None | None | None | None | N | None | 4.14E-05 | 0 | None | 0 | 5.12E-05 | None | 0 | None | 7.99E-05 | 8.63E-05 | 0 |
R/C | rs368932767 | 0.019 | 1.0 | N | 0.639 | 0.422 | None | gnomAD-3.1.2 | 1.05184E-04 | None | None | None | None | N | None | 7.24E-05 | 6.55E-05 | 0 | 0 | 0 | None | 9.42E-05 | 0 | 1.61727E-04 | 0 | 0 |
R/C | rs368932767 | 0.019 | 1.0 | N | 0.639 | 0.422 | None | gnomAD-4.0.0 | 1.14644E-04 | None | None | None | None | N | None | 5.34017E-05 | 1.66711E-05 | None | 0 | 1.55971E-04 | None | 3.12529E-05 | 0 | 1.33921E-04 | 1.09796E-05 | 1.92111E-04 |
R/G | rs368932767 | -0.154 | 0.998 | N | 0.475 | 0.413 | 0.451882325854 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
R/G | rs368932767 | -0.154 | 0.998 | N | 0.475 | 0.413 | 0.451882325854 | gnomAD-4.0.0 | 2.05257E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 3.47802E-05 | 0 |
R/H | rs141817409 | -0.69 | 0.783 | N | 0.297 | 0.265 | None | gnomAD-2.1.1 | 1.14448E-04 | None | None | None | None | N | None | 9.51199E-04 | 1.97997E-04 | None | 0 | 0 | None | 0 | None | 4E-05 | 7.84E-06 | 0 |
R/H | rs141817409 | -0.69 | 0.783 | N | 0.297 | 0.265 | None | gnomAD-3.1.2 | 2.8928E-04 | None | None | None | None | N | None | 9.41256E-04 | 6.55E-05 | 0 | 0 | 1.93125E-04 | None | 9.43E-05 | 0 | 2.94E-05 | 0 | 0 |
R/H | rs141817409 | -0.69 | 0.783 | N | 0.297 | 0.265 | None | 1000 genomes | 7.98722E-04 | None | None | None | None | N | None | 3E-03 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/H | rs141817409 | -0.69 | 0.783 | N | 0.297 | 0.265 | None | gnomAD-4.0.0 | 7.74568E-05 | None | None | None | None | N | None | 1.07957E-03 | 1.83284E-04 | None | 0 | 6.68688E-05 | None | 1.56299E-05 | 0 | 2.11902E-05 | 0 | 6.40184E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.843 | likely_pathogenic | 0.8013 | pathogenic | 0.096 | Stabilizing | 0.996 | D | 0.536 | neutral | None | None | None | None | N |
R/C | 0.4655 | ambiguous | 0.4595 | ambiguous | -0.172 | Destabilizing | 1.0 | D | 0.639 | neutral | N | 0.482004301 | None | None | N |
R/D | 0.9428 | likely_pathogenic | 0.9229 | pathogenic | -0.214 | Destabilizing | 0.999 | D | 0.553 | neutral | None | None | None | None | N |
R/E | 0.8349 | likely_pathogenic | 0.7849 | pathogenic | -0.156 | Destabilizing | 0.992 | D | 0.522 | neutral | None | None | None | None | N |
R/F | 0.9118 | likely_pathogenic | 0.8979 | pathogenic | -0.161 | Destabilizing | 0.999 | D | 0.625 | neutral | None | None | None | None | N |
R/G | 0.6424 | likely_pathogenic | 0.5882 | pathogenic | -0.077 | Destabilizing | 0.998 | D | 0.475 | neutral | N | 0.47442138 | None | None | N |
R/H | 0.2595 | likely_benign | 0.2412 | benign | -0.59 | Destabilizing | 0.783 | D | 0.297 | neutral | N | 0.520231028 | None | None | N |
R/I | 0.8414 | likely_pathogenic | 0.7772 | pathogenic | 0.509 | Stabilizing | 1.0 | D | 0.621 | neutral | None | None | None | None | N |
R/K | 0.2485 | likely_benign | 0.2369 | benign | -0.069 | Destabilizing | 0.99 | D | 0.496 | neutral | None | None | None | None | N |
R/L | 0.6771 | likely_pathogenic | 0.6284 | pathogenic | 0.509 | Stabilizing | 0.999 | D | 0.477 | neutral | N | 0.470519411 | None | None | N |
R/M | 0.798 | likely_pathogenic | 0.7469 | pathogenic | 0.004 | Stabilizing | 1.0 | D | 0.597 | neutral | None | None | None | None | N |
R/N | 0.9028 | likely_pathogenic | 0.881 | pathogenic | 0.034 | Stabilizing | 0.992 | D | 0.549 | neutral | None | None | None | None | N |
R/P | 0.9393 | likely_pathogenic | 0.9212 | pathogenic | 0.391 | Stabilizing | 1.0 | D | 0.6 | neutral | N | 0.465746471 | None | None | N |
R/Q | 0.2762 | likely_benign | 0.247 | benign | -0.004 | Destabilizing | 0.999 | D | 0.583 | neutral | None | None | None | None | N |
R/S | 0.8633 | likely_pathogenic | 0.8255 | pathogenic | -0.184 | Destabilizing | 0.998 | D | 0.54 | neutral | N | 0.460201289 | None | None | N |
R/T | 0.7982 | likely_pathogenic | 0.7149 | pathogenic | -0.004 | Destabilizing | 1.0 | D | 0.537 | neutral | None | None | None | None | N |
R/V | 0.8537 | likely_pathogenic | 0.8072 | pathogenic | 0.391 | Stabilizing | 1.0 | D | 0.622 | neutral | None | None | None | None | N |
R/W | 0.4744 | ambiguous | 0.4449 | ambiguous | -0.306 | Destabilizing | 1.0 | D | 0.643 | neutral | None | None | None | None | N |
R/Y | 0.7363 | likely_pathogenic | 0.7216 | pathogenic | 0.111 | Stabilizing | 0.998 | D | 0.609 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.