Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 3120 | 9583;9584;9585 | chr2:178767872;178767871;178767870 | chr2:179632599;179632598;179632597 |
N2AB | 3120 | 9583;9584;9585 | chr2:178767872;178767871;178767870 | chr2:179632599;179632598;179632597 |
N2A | 3120 | 9583;9584;9585 | chr2:178767872;178767871;178767870 | chr2:179632599;179632598;179632597 |
N2B | 3074 | 9445;9446;9447 | chr2:178767872;178767871;178767870 | chr2:179632599;179632598;179632597 |
Novex-1 | 3074 | 9445;9446;9447 | chr2:178767872;178767871;178767870 | chr2:179632599;179632598;179632597 |
Novex-2 | 3074 | 9445;9446;9447 | chr2:178767872;178767871;178767870 | chr2:179632599;179632598;179632597 |
Novex-3 | 3120 | 9583;9584;9585 | chr2:178767872;178767871;178767870 | chr2:179632599;179632598;179632597 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/G | None | None | 0.956 | N | 0.587 | 0.483 | 0.682070973213 | gnomAD-4.0.0 | 6.84078E-07 | None | None | None | None | N | None | 0 | 0 | None | 3.82614E-05 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/L | None | None | 0.956 | N | 0.567 | 0.459 | 0.671819145075 | gnomAD-4.0.0 | 6.84078E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.5208E-05 | None | 0 | 0 | 0 | 0 | 0 |
R/P | rs72647894 | None | 0.994 | D | 0.678 | 0.522 | 0.63959863781 | gnomAD-4.0.0 | 6.84078E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99298E-07 | 0 | 0 |
R/Q | rs72647894 | 0.01 | 0.994 | N | 0.563 | 0.266 | None | gnomAD-2.1.1 | 4.31987E-03 | None | None | None | None | N | None | 5.60808E-04 | 6.21293E-04 | None | 1.15853E-03 | 0 | None | 4.47595E-03 | None | 8.84039E-03 | 6.11478E-03 | 3.46741E-03 |
R/Q | rs72647894 | 0.01 | 0.994 | N | 0.563 | 0.266 | None | gnomAD-3.1.2 | 3.89788E-03 | None | None | None | None | N | None | 7.24393E-04 | 1.17909E-03 | 1.09649E-03 | 1.1534E-03 | 1.9253E-04 | None | 1.07385E-02 | 0 | 5.95291E-03 | 3.93375E-03 | 4.79846E-04 |
R/Q | rs72647894 | 0.01 | 0.994 | N | 0.563 | 0.266 | None | 1000 genomes | 1.59744E-03 | None | None | None | None | N | None | 8E-04 | 0 | None | None | 0 | 2E-03 | None | None | None | 5.1E-03 | None |
R/Q | rs72647894 | 0.01 | 0.994 | N | 0.563 | 0.266 | None | gnomAD-4.0.0 | 3.7582E-03 | None | None | None | None | N | None | 7.73168E-04 | 8.49887E-04 | None | 8.7826E-04 | 2.22955E-05 | None | 9.02674E-03 | 2.63939E-03 | 4.04067E-03 | 4.09512E-03 | 3.104E-03 |
R/W | rs149492487 | -0.507 | 1.0 | N | 0.797 | 0.598 | None | gnomAD-2.1.1 | 3.54E-05 | None | None | None | None | N | None | 1.20173E-04 | 0 | None | 0 | 0 | None | 1.30685E-04 | None | 0 | 2.33E-05 | 0 |
R/W | rs149492487 | -0.507 | 1.0 | N | 0.797 | 0.598 | None | gnomAD-3.1.2 | 4.6E-05 | None | None | None | None | N | None | 1.44844E-04 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 4.78469E-04 |
R/W | rs149492487 | -0.507 | 1.0 | N | 0.797 | 0.598 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/W | rs149492487 | -0.507 | 1.0 | N | 0.797 | 0.598 | None | gnomAD-4.0.0 | 1.42498E-05 | None | None | None | None | N | None | 1.0663E-04 | 0 | None | 0 | 0 | None | 0 | 0 | 5.08476E-06 | 7.68673E-05 | 3.19969E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.6401 | likely_pathogenic | 0.7185 | pathogenic | -0.474 | Destabilizing | 0.919 | D | 0.587 | neutral | None | None | None | None | N |
R/C | 0.4165 | ambiguous | 0.4207 | ambiguous | -0.438 | Destabilizing | 0.999 | D | 0.751 | deleterious | None | None | None | None | N |
R/D | 0.908 | likely_pathogenic | 0.9294 | pathogenic | -0.038 | Destabilizing | 0.851 | D | 0.565 | neutral | None | None | None | None | N |
R/E | 0.6499 | likely_pathogenic | 0.7205 | pathogenic | 0.038 | Stabilizing | 0.851 | D | 0.553 | neutral | None | None | None | None | N |
R/F | 0.773 | likely_pathogenic | 0.8319 | pathogenic | -0.606 | Destabilizing | 0.996 | D | 0.703 | prob.neutral | None | None | None | None | N |
R/G | 0.5037 | ambiguous | 0.5709 | pathogenic | -0.712 | Destabilizing | 0.956 | D | 0.587 | neutral | N | 0.509097238 | None | None | N |
R/H | 0.1993 | likely_benign | 0.2024 | benign | -1.066 | Destabilizing | 0.988 | D | 0.569 | neutral | None | None | None | None | N |
R/I | 0.5639 | ambiguous | 0.7068 | pathogenic | 0.138 | Stabilizing | 0.988 | D | 0.697 | prob.neutral | None | None | None | None | N |
R/K | 0.1196 | likely_benign | 0.1489 | benign | -0.463 | Destabilizing | 0.034 | N | 0.221 | neutral | None | None | None | None | N |
R/L | 0.4567 | ambiguous | 0.5411 | ambiguous | 0.138 | Stabilizing | 0.956 | D | 0.567 | neutral | N | 0.50993017 | None | None | N |
R/M | 0.484 | ambiguous | 0.6237 | pathogenic | -0.096 | Destabilizing | 0.999 | D | 0.611 | neutral | None | None | None | None | N |
R/N | 0.8006 | likely_pathogenic | 0.8476 | pathogenic | 0.022 | Stabilizing | 0.132 | N | 0.313 | neutral | None | None | None | None | N |
R/P | 0.9718 | likely_pathogenic | 0.976 | pathogenic | -0.045 | Destabilizing | 0.994 | D | 0.678 | prob.neutral | D | 0.677368833 | None | None | N |
R/Q | 0.1712 | likely_benign | 0.1862 | benign | -0.208 | Destabilizing | 0.994 | D | 0.563 | neutral | N | 0.503151226 | None | None | N |
R/S | 0.7277 | likely_pathogenic | 0.7791 | pathogenic | -0.617 | Destabilizing | 0.919 | D | 0.587 | neutral | None | None | None | None | N |
R/T | 0.4906 | ambiguous | 0.5859 | pathogenic | -0.387 | Destabilizing | 0.919 | D | 0.597 | neutral | None | None | None | None | N |
R/V | 0.588 | likely_pathogenic | 0.6875 | pathogenic | -0.045 | Destabilizing | 0.988 | D | 0.672 | neutral | None | None | None | None | N |
R/W | 0.4038 | ambiguous | 0.4704 | ambiguous | -0.434 | Destabilizing | 1.0 | D | 0.797 | deleterious | N | 0.507171231 | None | None | N |
R/Y | 0.6703 | likely_pathogenic | 0.7226 | pathogenic | -0.074 | Destabilizing | 0.996 | D | 0.689 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.