Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 31242 | 93949;93950;93951 | chr2:178547902;178547901;178547900 | chr2:179412629;179412628;179412627 |
N2AB | 29601 | 89026;89027;89028 | chr2:178547902;178547901;178547900 | chr2:179412629;179412628;179412627 |
N2A | 28674 | 86245;86246;86247 | chr2:178547902;178547901;178547900 | chr2:179412629;179412628;179412627 |
N2B | 22177 | 66754;66755;66756 | chr2:178547902;178547901;178547900 | chr2:179412629;179412628;179412627 |
Novex-1 | 22302 | 67129;67130;67131 | chr2:178547902;178547901;178547900 | chr2:179412629;179412628;179412627 |
Novex-2 | 22369 | 67330;67331;67332 | chr2:178547902;178547901;178547900 | chr2:179412629;179412628;179412627 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs563887822 | -0.094 | 1.0 | N | 0.761 | 0.47 | 0.637288232684 | gnomAD-2.1.1 | 3.21E-05 | None | None | None | None | I | None | 4.13E-05 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 5.47E-05 | 0 |
R/C | rs563887822 | -0.094 | 1.0 | N | 0.761 | 0.47 | 0.637288232684 | gnomAD-3.1.2 | 4.6E-05 | None | None | None | None | I | None | 2.41E-05 | 0 | 0 | 0 | 1.92678E-04 | None | 0 | 0 | 5.88E-05 | 2.07125E-04 | 0 |
R/C | rs563887822 | -0.094 | 1.0 | N | 0.761 | 0.47 | 0.637288232684 | 1000 genomes | 1.99681E-04 | None | None | None | None | I | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
R/C | rs563887822 | -0.094 | 1.0 | N | 0.761 | 0.47 | 0.637288232684 | gnomAD-4.0.0 | 4.2756E-05 | None | None | None | None | I | None | 1.33273E-05 | 0 | None | 0 | 2.22955E-05 | None | 0 | 0 | 5.00071E-05 | 4.39252E-05 | 6.40205E-05 |
R/H | rs369899675 | -0.805 | 1.0 | D | 0.765 | 0.434 | None | gnomAD-2.1.1 | 9.64E-05 | None | None | None | None | I | None | 4.13E-05 | 2.83E-05 | None | 0 | 1.18009E-03 | None | 0 | None | 0 | 1.56E-05 | 0 |
R/H | rs369899675 | -0.805 | 1.0 | D | 0.765 | 0.434 | None | gnomAD-3.1.2 | 6.58E-05 | None | None | None | None | I | None | 4.83E-05 | 6.56E-05 | 0 | 0 | 5.78481E-04 | None | 0 | 0 | 2.94E-05 | 0 | 9.56938E-04 |
R/H | rs369899675 | -0.805 | 1.0 | D | 0.765 | 0.434 | None | gnomAD-4.0.0 | 4.4E-05 | None | None | None | None | I | None | 5.34245E-05 | 3.33567E-05 | None | 0 | 5.79555E-04 | None | 0 | 3.28947E-04 | 2.8818E-05 | 0 | 4.80323E-05 |
R/L | rs369899675 | None | 1.0 | N | 0.639 | 0.463 | 0.598660209896 | gnomAD-4.0.0 | 6.84195E-07 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99437E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.8692 | likely_pathogenic | 0.8361 | pathogenic | -0.014 | Destabilizing | 0.999 | D | 0.655 | neutral | None | None | None | None | I |
R/C | 0.3033 | likely_benign | 0.2539 | benign | -0.301 | Destabilizing | 1.0 | D | 0.761 | deleterious | N | 0.505304749 | None | None | I |
R/D | 0.9687 | likely_pathogenic | 0.9646 | pathogenic | -0.346 | Destabilizing | 1.0 | D | 0.714 | prob.delet. | None | None | None | None | I |
R/E | 0.8062 | likely_pathogenic | 0.7734 | pathogenic | -0.317 | Destabilizing | 0.999 | D | 0.705 | prob.neutral | None | None | None | None | I |
R/F | 0.7775 | likely_pathogenic | 0.7349 | pathogenic | -0.364 | Destabilizing | 1.0 | D | 0.729 | prob.delet. | None | None | None | None | I |
R/G | 0.8303 | likely_pathogenic | 0.8017 | pathogenic | -0.13 | Destabilizing | 1.0 | D | 0.639 | neutral | N | 0.505051259 | None | None | I |
R/H | 0.1898 | likely_benign | 0.1791 | benign | -0.608 | Destabilizing | 1.0 | D | 0.765 | deleterious | D | 0.525016064 | None | None | I |
R/I | 0.4677 | ambiguous | 0.3888 | ambiguous | 0.245 | Stabilizing | 1.0 | D | 0.727 | prob.delet. | None | None | None | None | I |
R/K | 0.1934 | likely_benign | 0.1941 | benign | -0.238 | Destabilizing | 0.998 | D | 0.522 | neutral | None | None | None | None | I |
R/L | 0.5154 | ambiguous | 0.4439 | ambiguous | 0.245 | Stabilizing | 1.0 | D | 0.639 | neutral | N | 0.508238457 | None | None | I |
R/M | 0.613 | likely_pathogenic | 0.5235 | ambiguous | -0.142 | Destabilizing | 1.0 | D | 0.734 | prob.delet. | None | None | None | None | I |
R/N | 0.9048 | likely_pathogenic | 0.8911 | pathogenic | -0.152 | Destabilizing | 1.0 | D | 0.739 | prob.delet. | None | None | None | None | I |
R/P | 0.9863 | likely_pathogenic | 0.9842 | pathogenic | 0.175 | Stabilizing | 1.0 | D | 0.712 | prob.delet. | N | 0.493948443 | None | None | I |
R/Q | 0.1931 | likely_benign | 0.1742 | benign | -0.184 | Destabilizing | 1.0 | D | 0.724 | prob.delet. | None | None | None | None | I |
R/S | 0.8757 | likely_pathogenic | 0.8604 | pathogenic | -0.308 | Destabilizing | 1.0 | D | 0.675 | prob.neutral | N | 0.478203552 | None | None | I |
R/T | 0.7344 | likely_pathogenic | 0.6697 | pathogenic | -0.185 | Destabilizing | 1.0 | D | 0.67 | neutral | None | None | None | None | I |
R/V | 0.6411 | likely_pathogenic | 0.5844 | pathogenic | 0.175 | Stabilizing | 1.0 | D | 0.701 | prob.neutral | None | None | None | None | I |
R/W | 0.3146 | likely_benign | 0.2576 | benign | -0.569 | Destabilizing | 1.0 | D | 0.766 | deleterious | None | None | None | None | I |
R/Y | 0.5712 | likely_pathogenic | 0.5214 | ambiguous | -0.175 | Destabilizing | 1.0 | D | 0.74 | deleterious | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.