Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 31349 | 94270;94271;94272 | chr2:178547581;178547580;178547579 | chr2:179412308;179412307;179412306 |
N2AB | 29708 | 89347;89348;89349 | chr2:178547581;178547580;178547579 | chr2:179412308;179412307;179412306 |
N2A | 28781 | 86566;86567;86568 | chr2:178547581;178547580;178547579 | chr2:179412308;179412307;179412306 |
N2B | 22284 | 67075;67076;67077 | chr2:178547581;178547580;178547579 | chr2:179412308;179412307;179412306 |
Novex-1 | 22409 | 67450;67451;67452 | chr2:178547581;178547580;178547579 | chr2:179412308;179412307;179412306 |
Novex-2 | 22476 | 67651;67652;67653 | chr2:178547581;178547580;178547579 | chr2:179412308;179412307;179412306 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs727503549 | -2.001 | 1.0 | N | 0.845 | 0.499 | 0.65667953858 | gnomAD-2.1.1 | 8.93E-05 | None | None | None | None | N | None | 0 | 0 | None | 3.87222E-04 | 1.02617E-04 | None | 4.24809E-04 | None | 1.19894E-04 | 7.82E-06 | 2.80899E-04 |
R/C | rs727503549 | -2.001 | 1.0 | N | 0.845 | 0.499 | 0.65667953858 | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 9.43E-05 | 0 | 1.47E-05 | 2.07383E-04 | 4.78011E-04 |
R/C | rs727503549 | -2.001 | 1.0 | N | 0.845 | 0.499 | 0.65667953858 | gnomAD-4.0.0 | 5.32947E-05 | None | None | None | None | N | None | 0 | 0 | None | 3.71622E-04 | 2.89842E-04 | None | 7.81128E-05 | 0 | 1.61042E-05 | 3.73298E-04 | 6.4043E-05 |
R/G | rs727503549 | -2.66 | 1.0 | N | 0.779 | 0.559 | 0.629010756219 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 6.46E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
R/H | rs181104321 | -2.395 | 1.0 | N | 0.715 | 0.405 | None | gnomAD-2.1.1 | 2.22519E-03 | None | None | None | None | N | None | 2.76951E-03 | 7.36002E-04 | None | 0 | 0 | None | 3.27E-05 | None | 1.41487E-02 | 1.22756E-03 | 2.5288E-03 |
R/H | rs181104321 | -2.395 | 1.0 | N | 0.715 | 0.405 | None | gnomAD-3.1.2 | 2.64279E-03 | None | None | None | None | N | None | 2.99329E-03 | 1.57377E-03 | 0 | 0 | 0 | None | 1.51658E-02 | 0 | 1.30836E-03 | 2.07039E-04 | 1.43403E-03 |
R/H | rs181104321 | -2.395 | 1.0 | N | 0.715 | 0.405 | None | 1000 genomes | 1.19808E-03 | None | None | None | None | N | None | 8E-04 | 1.4E-03 | None | None | 0 | 4E-03 | None | None | None | 0 | None |
R/H | rs181104321 | -2.395 | 1.0 | N | 0.715 | 0.405 | None | gnomAD-4.0.0 | 1.71084E-03 | None | None | None | None | N | None | 2.81243E-03 | 9.66925E-04 | None | 0 | 0 | None | 1.32006E-02 | 3.29924E-04 | 1.32223E-03 | 1.09789E-04 | 1.20035E-03 |
R/L | rs181104321 | -1.325 | 1.0 | N | 0.779 | 0.475 | 0.565757058302 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.89E-06 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.9698 | likely_pathogenic | 0.9566 | pathogenic | -2.086 | Highly Destabilizing | 0.999 | D | 0.627 | neutral | None | None | None | None | N |
R/C | 0.521 | ambiguous | 0.4975 | ambiguous | -2.066 | Highly Destabilizing | 1.0 | D | 0.845 | deleterious | N | 0.514750637 | None | None | N |
R/D | 0.9964 | likely_pathogenic | 0.9941 | pathogenic | -0.787 | Destabilizing | 1.0 | D | 0.857 | deleterious | None | None | None | None | N |
R/E | 0.9402 | likely_pathogenic | 0.9143 | pathogenic | -0.62 | Destabilizing | 0.999 | D | 0.607 | neutral | None | None | None | None | N |
R/F | 0.9758 | likely_pathogenic | 0.9673 | pathogenic | -1.736 | Destabilizing | 1.0 | D | 0.826 | deleterious | None | None | None | None | N |
R/G | 0.9426 | likely_pathogenic | 0.9167 | pathogenic | -2.399 | Highly Destabilizing | 1.0 | D | 0.779 | deleterious | N | 0.508808743 | None | None | N |
R/H | 0.5146 | ambiguous | 0.504 | ambiguous | -2.302 | Highly Destabilizing | 1.0 | D | 0.715 | prob.delet. | N | 0.497959417 | None | None | N |
R/I | 0.9418 | likely_pathogenic | 0.9268 | pathogenic | -1.195 | Destabilizing | 1.0 | D | 0.847 | deleterious | None | None | None | None | N |
R/K | 0.2811 | likely_benign | 0.2501 | benign | -1.651 | Destabilizing | 0.998 | D | 0.467 | neutral | None | None | None | None | N |
R/L | 0.8767 | likely_pathogenic | 0.8432 | pathogenic | -1.195 | Destabilizing | 1.0 | D | 0.779 | deleterious | N | 0.514057204 | None | None | N |
R/M | 0.8651 | likely_pathogenic | 0.8185 | pathogenic | -1.463 | Destabilizing | 1.0 | D | 0.809 | deleterious | None | None | None | None | N |
R/N | 0.9855 | likely_pathogenic | 0.9792 | pathogenic | -1.251 | Destabilizing | 1.0 | D | 0.721 | prob.delet. | None | None | None | None | N |
R/P | 0.9992 | likely_pathogenic | 0.9987 | pathogenic | -1.479 | Destabilizing | 1.0 | D | 0.847 | deleterious | N | 0.509062233 | None | None | N |
R/Q | 0.3208 | likely_benign | 0.2677 | benign | -1.397 | Destabilizing | 1.0 | D | 0.698 | prob.neutral | None | None | None | None | N |
R/S | 0.9843 | likely_pathogenic | 0.9763 | pathogenic | -2.309 | Highly Destabilizing | 1.0 | D | 0.807 | deleterious | D | 0.522463256 | None | None | N |
R/T | 0.9625 | likely_pathogenic | 0.9409 | pathogenic | -1.942 | Destabilizing | 1.0 | D | 0.795 | deleterious | None | None | None | None | N |
R/V | 0.9477 | likely_pathogenic | 0.9295 | pathogenic | -1.479 | Destabilizing | 1.0 | D | 0.853 | deleterious | None | None | None | None | N |
R/W | 0.7864 | likely_pathogenic | 0.7253 | pathogenic | -1.169 | Destabilizing | 1.0 | D | 0.83 | deleterious | None | None | None | None | N |
R/Y | 0.9234 | likely_pathogenic | 0.9034 | pathogenic | -0.99 | Destabilizing | 1.0 | D | 0.857 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.