Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 3148 | 9667;9668;9669 | chr2:178767788;178767787;178767786 | chr2:179632515;179632514;179632513 |
N2AB | 3148 | 9667;9668;9669 | chr2:178767788;178767787;178767786 | chr2:179632515;179632514;179632513 |
N2A | 3148 | 9667;9668;9669 | chr2:178767788;178767787;178767786 | chr2:179632515;179632514;179632513 |
N2B | 3102 | 9529;9530;9531 | chr2:178767788;178767787;178767786 | chr2:179632515;179632514;179632513 |
Novex-1 | 3102 | 9529;9530;9531 | chr2:178767788;178767787;178767786 | chr2:179632515;179632514;179632513 |
Novex-2 | 3102 | 9529;9530;9531 | chr2:178767788;178767787;178767786 | chr2:179632515;179632514;179632513 |
Novex-3 | 3148 | 9667;9668;9669 | chr2:178767788;178767787;178767786 | chr2:179632515;179632514;179632513 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs372196051 | -0.235 | 1.0 | N | 0.761 | 0.331 | None | gnomAD-2.1.1 | 1.77E-05 | None | None | None | None | N | None | 0 | 2.82E-05 | None | 0 | 0 | None | 0 | None | 0 | 3.11E-05 | 0 |
R/C | rs372196051 | -0.235 | 1.0 | N | 0.761 | 0.331 | None | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 5.88E-05 | 0 | 0 |
R/C | rs372196051 | -0.235 | 1.0 | N | 0.761 | 0.331 | None | gnomAD-4.0.0 | 3.65561E-05 | None | None | None | None | N | None | 0 | 1.66661E-05 | None | 0 | 0 | None | 0 | 0 | 4.83054E-05 | 0 | 1.60046E-05 |
R/H | rs368786036 | -0.944 | 1.0 | N | 0.764 | 0.267 | None | gnomAD-2.1.1 | 2.79E-05 | None | None | None | None | N | None | 6.15E-05 | 0 | None | 0 | 0 | None | 1.30659E-04 | None | 0 | 1.76E-05 | 0 |
R/H | rs368786036 | -0.944 | 1.0 | N | 0.764 | 0.267 | None | gnomAD-3.1.2 | 5.26E-05 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 8.82E-05 | 2.07211E-04 | 0 |
R/H | rs368786036 | -0.944 | 1.0 | N | 0.764 | 0.267 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 1E-03 | None |
R/H | rs368786036 | -0.944 | 1.0 | N | 0.764 | 0.267 | None | gnomAD-4.0.0 | 5.6378E-05 | None | None | None | None | N | None | 5.32992E-05 | 0 | None | 0 | 2.22797E-05 | None | 0 | 0 | 6.44067E-05 | 7.68555E-05 | 4.79954E-05 |
R/L | rs368786036 | 0.416 | 1.0 | N | 0.624 | 0.284 | 0.254761474806 | gnomAD-2.1.1 | 3.98E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
R/L | rs368786036 | 0.416 | 1.0 | N | 0.624 | 0.284 | 0.254761474806 | gnomAD-4.0.0 | 8.20898E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 3.5972E-06 | 3.47794E-05 | 8.27897E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.8631 | likely_pathogenic | 0.7703 | pathogenic | 0.082 | Stabilizing | 0.999 | D | 0.658 | neutral | None | None | None | None | N |
R/C | 0.6248 | likely_pathogenic | 0.4441 | ambiguous | -0.092 | Destabilizing | 1.0 | D | 0.761 | deleterious | N | 0.341993683 | None | None | N |
R/D | 0.9603 | likely_pathogenic | 0.914 | pathogenic | -0.196 | Destabilizing | 1.0 | D | 0.707 | prob.neutral | None | None | None | None | N |
R/E | 0.8277 | likely_pathogenic | 0.7333 | pathogenic | -0.141 | Destabilizing | 0.999 | D | 0.709 | prob.delet. | None | None | None | None | N |
R/F | 0.8772 | likely_pathogenic | 0.8111 | pathogenic | -0.158 | Destabilizing | 1.0 | D | 0.736 | prob.delet. | None | None | None | None | N |
R/G | 0.8118 | likely_pathogenic | 0.6817 | pathogenic | -0.095 | Destabilizing | 1.0 | D | 0.624 | neutral | N | 0.341050084 | None | None | N |
R/H | 0.2607 | likely_benign | 0.1623 | benign | -0.615 | Destabilizing | 1.0 | D | 0.764 | deleterious | N | 0.344364775 | None | None | N |
R/I | 0.7028 | likely_pathogenic | 0.6024 | pathogenic | 0.508 | Stabilizing | 1.0 | D | 0.739 | prob.delet. | None | None | None | None | N |
R/K | 0.2604 | likely_benign | 0.2066 | benign | -0.039 | Destabilizing | 0.998 | D | 0.649 | neutral | None | None | None | None | N |
R/L | 0.6255 | likely_pathogenic | 0.5304 | ambiguous | 0.508 | Stabilizing | 1.0 | D | 0.624 | neutral | N | 0.336827851 | None | None | N |
R/M | 0.7542 | likely_pathogenic | 0.6613 | pathogenic | 0.051 | Stabilizing | 1.0 | D | 0.729 | prob.delet. | None | None | None | None | N |
R/N | 0.9003 | likely_pathogenic | 0.8073 | pathogenic | 0.141 | Stabilizing | 1.0 | D | 0.733 | prob.delet. | None | None | None | None | N |
R/P | 0.9632 | likely_pathogenic | 0.9237 | pathogenic | 0.385 | Stabilizing | 1.0 | D | 0.694 | prob.neutral | N | 0.337254512 | None | None | N |
R/Q | 0.2969 | likely_benign | 0.2119 | benign | 0.071 | Stabilizing | 1.0 | D | 0.723 | prob.delet. | None | None | None | None | N |
R/S | 0.9045 | likely_pathogenic | 0.8131 | pathogenic | -0.104 | Destabilizing | 1.0 | D | 0.673 | neutral | N | 0.339854219 | None | None | N |
R/T | 0.7675 | likely_pathogenic | 0.6343 | pathogenic | 0.074 | Stabilizing | 1.0 | D | 0.673 | neutral | None | None | None | None | N |
R/V | 0.7637 | likely_pathogenic | 0.6521 | pathogenic | 0.385 | Stabilizing | 1.0 | D | 0.721 | prob.delet. | None | None | None | None | N |
R/W | 0.5191 | ambiguous | 0.4215 | ambiguous | -0.278 | Destabilizing | 1.0 | D | 0.775 | deleterious | None | None | None | None | N |
R/Y | 0.7791 | likely_pathogenic | 0.653 | pathogenic | 0.132 | Stabilizing | 1.0 | D | 0.722 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.