Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 31520 | 94783;94784;94785 | chr2:178546870;178546869;178546868 | chr2:179411597;179411596;179411595 |
N2AB | 29879 | 89860;89861;89862 | chr2:178546870;178546869;178546868 | chr2:179411597;179411596;179411595 |
N2A | 28952 | 87079;87080;87081 | chr2:178546870;178546869;178546868 | chr2:179411597;179411596;179411595 |
N2B | 22455 | 67588;67589;67590 | chr2:178546870;178546869;178546868 | chr2:179411597;179411596;179411595 |
Novex-1 | 22580 | 67963;67964;67965 | chr2:178546870;178546869;178546868 | chr2:179411597;179411596;179411595 |
Novex-2 | 22647 | 68164;68165;68166 | chr2:178546870;178546869;178546868 | chr2:179411597;179411596;179411595 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/K | rs879111902 | None | 0.248 | N | 0.134 | 0.142 | None | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/K | rs879111902 | None | 0.248 | N | 0.134 | 0.142 | None | gnomAD-4.0.0 | 3.75908E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.13764E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.8917 | likely_pathogenic | 0.9176 | pathogenic | -0.478 | Destabilizing | 0.97 | D | 0.695 | prob.neutral | None | None | None | None | N |
R/C | 0.6303 | likely_pathogenic | 0.674 | pathogenic | -0.398 | Destabilizing | 1.0 | D | 0.809 | deleterious | None | None | None | None | N |
R/D | 0.9799 | likely_pathogenic | 0.9839 | pathogenic | -0.25 | Destabilizing | 0.996 | D | 0.643 | neutral | None | None | None | None | N |
R/E | 0.9319 | likely_pathogenic | 0.9409 | pathogenic | -0.204 | Destabilizing | 0.97 | D | 0.639 | neutral | None | None | None | None | N |
R/F | 0.9805 | likely_pathogenic | 0.9848 | pathogenic | -0.79 | Destabilizing | 0.996 | D | 0.759 | deleterious | None | None | None | None | N |
R/G | 0.7731 | likely_pathogenic | 0.8288 | pathogenic | -0.673 | Destabilizing | 0.98 | D | 0.669 | neutral | N | 0.480229845 | None | None | N |
R/H | 0.4331 | ambiguous | 0.4978 | ambiguous | -1.075 | Destabilizing | 0.191 | N | 0.337 | neutral | None | None | None | None | N |
R/I | 0.9588 | likely_pathogenic | 0.9689 | pathogenic | 0.006 | Stabilizing | 0.998 | D | 0.747 | deleterious | N | 0.490131376 | None | None | N |
R/K | 0.2767 | likely_benign | 0.3082 | benign | -0.468 | Destabilizing | 0.248 | N | 0.134 | neutral | N | 0.425357997 | None | None | N |
R/L | 0.8849 | likely_pathogenic | 0.9081 | pathogenic | 0.006 | Stabilizing | 0.985 | D | 0.661 | neutral | None | None | None | None | N |
R/M | 0.9412 | likely_pathogenic | 0.954 | pathogenic | -0.068 | Destabilizing | 1.0 | D | 0.674 | neutral | None | None | None | None | N |
R/N | 0.9561 | likely_pathogenic | 0.9671 | pathogenic | 0.033 | Stabilizing | 0.97 | D | 0.643 | neutral | None | None | None | None | N |
R/P | 0.945 | likely_pathogenic | 0.9594 | pathogenic | -0.136 | Destabilizing | 0.999 | D | 0.733 | prob.delet. | None | None | None | None | N |
R/Q | 0.4414 | ambiguous | 0.5001 | ambiguous | -0.266 | Destabilizing | 0.991 | D | 0.653 | neutral | None | None | None | None | N |
R/S | 0.9249 | likely_pathogenic | 0.9445 | pathogenic | -0.538 | Destabilizing | 0.961 | D | 0.701 | prob.neutral | N | 0.479437624 | None | None | N |
R/T | 0.9403 | likely_pathogenic | 0.9558 | pathogenic | -0.36 | Destabilizing | 0.98 | D | 0.671 | neutral | N | 0.506376296 | None | None | N |
R/V | 0.957 | likely_pathogenic | 0.9651 | pathogenic | -0.136 | Destabilizing | 0.996 | D | 0.727 | prob.delet. | None | None | None | None | N |
R/W | 0.8519 | likely_pathogenic | 0.8688 | pathogenic | -0.676 | Destabilizing | 1.0 | D | 0.842 | deleterious | None | None | None | None | N |
R/Y | 0.9319 | likely_pathogenic | 0.9439 | pathogenic | -0.291 | Destabilizing | 0.991 | D | 0.733 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.