Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 31784 | 95575;95576;95577 | chr2:178545886;178545885;178545884 | chr2:179410613;179410612;179410611 |
N2AB | 30143 | 90652;90653;90654 | chr2:178545886;178545885;178545884 | chr2:179410613;179410612;179410611 |
N2A | 29216 | 87871;87872;87873 | chr2:178545886;178545885;178545884 | chr2:179410613;179410612;179410611 |
N2B | 22719 | 68380;68381;68382 | chr2:178545886;178545885;178545884 | chr2:179410613;179410612;179410611 |
Novex-1 | 22844 | 68755;68756;68757 | chr2:178545886;178545885;178545884 | chr2:179410613;179410612;179410611 |
Novex-2 | 22911 | 68956;68957;68958 | chr2:178545886;178545885;178545884 | chr2:179410613;179410612;179410611 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/T | None | None | 0.946 | D | 0.702 | 0.789 | 0.676012115908 | gnomAD-4.0.0 | 1.20032E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.3125E-06 | 0 | 0 |
A/V | rs1553520967 | None | 0.946 | D | 0.68 | 0.69 | 0.663723012633 | Palmio (2019) | None | HMERF | het | None | None | N | Genetic analysis of genes in 12 HMERF families; co-segregates with condition (n = 6, 6 affected (8 total)) | None | None | None | None | None | None | None | None | None | None | None |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A/C | 0.8605 | likely_pathogenic | 0.84 | pathogenic | -1.76 | Destabilizing | 0.999 | D | 0.709 | prob.delet. | None | None | None | None | N |
A/D | 0.9933 | likely_pathogenic | 0.9942 | pathogenic | -2.819 | Highly Destabilizing | 0.988 | D | 0.838 | deleterious | None | None | None | None | N |
A/E | 0.9925 | likely_pathogenic | 0.9929 | pathogenic | -2.604 | Highly Destabilizing | 0.984 | D | 0.807 | deleterious | D | 0.662217087 | None | None | N |
A/F | 0.9876 | likely_pathogenic | 0.9859 | pathogenic | -0.587 | Destabilizing | 0.996 | D | 0.877 | deleterious | None | None | None | None | N |
A/G | 0.1238 | likely_benign | 0.125 | benign | -2.069 | Highly Destabilizing | 0.004 | N | 0.379 | neutral | D | 0.544722131 | None | None | N |
A/H | 0.9962 | likely_pathogenic | 0.9963 | pathogenic | -2.052 | Highly Destabilizing | 0.999 | D | 0.87 | deleterious | None | None | None | None | N |
A/I | 0.9751 | likely_pathogenic | 0.9708 | pathogenic | -0.498 | Destabilizing | 0.996 | D | 0.817 | deleterious | None | None | None | None | N |
A/K | 0.9983 | likely_pathogenic | 0.9984 | pathogenic | -1.453 | Destabilizing | 0.988 | D | 0.802 | deleterious | None | None | None | None | N |
A/L | 0.9209 | likely_pathogenic | 0.9194 | pathogenic | -0.498 | Destabilizing | 0.959 | D | 0.811 | deleterious | None | None | None | None | N |
A/M | 0.9552 | likely_pathogenic | 0.9503 | pathogenic | -1.013 | Destabilizing | 0.999 | D | 0.797 | deleterious | None | None | None | None | N |
A/N | 0.9847 | likely_pathogenic | 0.9854 | pathogenic | -1.893 | Destabilizing | 0.976 | D | 0.845 | deleterious | None | None | None | None | N |
A/P | 0.6176 | likely_pathogenic | 0.6679 | pathogenic | -0.853 | Destabilizing | 0.995 | D | 0.819 | deleterious | D | 0.613291066 | None | None | N |
A/Q | 0.9887 | likely_pathogenic | 0.9892 | pathogenic | -1.61 | Destabilizing | 0.996 | D | 0.804 | deleterious | None | None | None | None | N |
A/R | 0.9943 | likely_pathogenic | 0.9948 | pathogenic | -1.533 | Destabilizing | 0.988 | D | 0.818 | deleterious | None | None | None | None | N |
A/S | 0.3771 | ambiguous | 0.3577 | ambiguous | -2.227 | Highly Destabilizing | 0.896 | D | 0.619 | neutral | D | 0.585442026 | None | None | N |
A/T | 0.8176 | likely_pathogenic | 0.8058 | pathogenic | -1.913 | Destabilizing | 0.946 | D | 0.702 | prob.neutral | D | 0.629138983 | None | None | N |
A/V | 0.874 | likely_pathogenic | 0.8651 | pathogenic | -0.853 | Destabilizing | 0.946 | D | 0.68 | prob.neutral | D | 0.635266345 | None | None | N |
A/W | 0.9982 | likely_pathogenic | 0.9982 | pathogenic | -1.278 | Destabilizing | 0.999 | D | 0.862 | deleterious | None | None | None | None | N |
A/Y | 0.9939 | likely_pathogenic | 0.9933 | pathogenic | -0.992 | Destabilizing | 0.996 | D | 0.885 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.