Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 31852 | 95779;95780;95781 | chr2:178545556;178545555;178545554 | chr2:179410283;179410282;179410281 |
N2AB | 30211 | 90856;90857;90858 | chr2:178545556;178545555;178545554 | chr2:179410283;179410282;179410281 |
N2A | 29284 | 88075;88076;88077 | chr2:178545556;178545555;178545554 | chr2:179410283;179410282;179410281 |
N2B | 22787 | 68584;68585;68586 | chr2:178545556;178545555;178545554 | chr2:179410283;179410282;179410281 |
Novex-1 | 22912 | 68959;68960;68961 | chr2:178545556;178545555;178545554 | chr2:179410283;179410282;179410281 |
Novex-2 | 22979 | 69160;69161;69162 | chr2:178545556;178545555;178545554 | chr2:179410283;179410282;179410281 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/P | rs62621206 | -0.064 | 0.896 | N | 0.319 | 0.2 | None | gnomAD-2.1.1 | 1.08384E-02 | None | None | None | None | I | None | 3.01853E-03 | 5.59765E-03 | None | 9.08564E-03 | 0 | None | 2.64689E-03 | None | 1.23891E-02 | 1.70026E-02 | 1.4446E-02 |
L/P | rs62621206 | -0.064 | 0.896 | N | 0.319 | 0.2 | None | gnomAD-3.1.2 | 1.12135E-02 | None | None | None | None | I | None | 3.13707E-03 | 1.1261E-02 | 3.95604E-02 | 1.18088E-02 | 0 | None | 1.03715E-02 | 0 | 1.72738E-02 | 2.28311E-03 | 1.48325E-02 |
L/P | rs62621206 | -0.064 | 0.896 | N | 0.319 | 0.2 | None | 1000 genomes | 5.59105E-03 | None | None | None | None | I | None | 8E-04 | 8.6E-03 | None | None | 0 | 1.99E-02 | None | None | None | 1E-03 | None |
L/P | rs62621206 | -0.064 | 0.896 | N | 0.319 | 0.2 | None | gnomAD-4.0.0 | 1.51072E-02 | None | None | None | None | I | None | 2.85227E-03 | 8.09838E-03 | None | 9.62903E-03 | 4.45732E-05 | None | 1.25922E-02 | 1.37054E-02 | 1.80035E-02 | 2.81102E-03 | 1.5559E-02 |
L/Q | None | -0.05 | 0.81 | N | 0.304 | 0.18 | 0.40146981186 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
L/Q | None | -0.05 | 0.81 | N | 0.304 | 0.18 | 0.40146981186 | gnomAD-4.0.0 | 1.36847E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99523E-07 | 1.15934E-05 | 0 |
L/R | rs62621206 | 0.315 | 0.81 | N | 0.311 | 0.204 | 0.372087925617 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.2317 | likely_benign | 0.2581 | benign | -0.435 | Destabilizing | 0.25 | N | 0.365 | neutral | None | None | None | None | I |
L/C | 0.5374 | ambiguous | 0.6068 | pathogenic | -0.867 | Destabilizing | 0.992 | D | 0.294 | neutral | None | None | None | None | I |
L/D | 0.7487 | likely_pathogenic | 0.8146 | pathogenic | 0.026 | Stabilizing | 0.85 | D | 0.322 | neutral | None | None | None | None | I |
L/E | 0.49 | ambiguous | 0.5704 | pathogenic | -0.057 | Destabilizing | 0.617 | D | 0.319 | neutral | None | None | None | None | I |
L/F | 0.1706 | likely_benign | 0.186 | benign | -0.559 | Destabilizing | 0.92 | D | 0.288 | neutral | None | None | None | None | I |
L/G | 0.4441 | ambiguous | 0.4962 | ambiguous | -0.526 | Destabilizing | 0.447 | N | 0.34 | neutral | None | None | None | None | I |
L/H | 0.3109 | likely_benign | 0.3499 | ambiguous | 0.092 | Stabilizing | 0.977 | D | 0.287 | neutral | None | None | None | None | I |
L/I | 0.0927 | likely_benign | 0.0984 | benign | -0.31 | Destabilizing | 0.021 | N | 0.202 | neutral | None | None | None | None | I |
L/K | 0.3908 | ambiguous | 0.4605 | ambiguous | -0.299 | Destabilizing | 0.447 | N | 0.3 | neutral | None | None | None | None | I |
L/M | 0.1049 | likely_benign | 0.1093 | benign | -0.61 | Destabilizing | 0.896 | D | 0.291 | neutral | N | 0.474440023 | None | None | I |
L/N | 0.3269 | likely_benign | 0.3863 | ambiguous | -0.199 | Destabilizing | 0.739 | D | 0.316 | neutral | None | None | None | None | I |
L/P | 0.2839 | likely_benign | 0.2866 | benign | -0.325 | Destabilizing | 0.896 | D | 0.319 | neutral | N | 0.490812198 | None | None | I |
L/Q | 0.1847 | likely_benign | 0.2019 | benign | -0.333 | Destabilizing | 0.81 | D | 0.304 | neutral | N | 0.454024678 | None | None | I |
L/R | 0.3253 | likely_benign | 0.3687 | ambiguous | 0.098 | Stabilizing | 0.81 | D | 0.311 | neutral | N | 0.493025784 | None | None | I |
L/S | 0.2449 | likely_benign | 0.2706 | benign | -0.625 | Destabilizing | 0.021 | N | 0.321 | neutral | None | None | None | None | I |
L/T | 0.1898 | likely_benign | 0.216 | benign | -0.607 | Destabilizing | 0.009 | N | 0.173 | neutral | None | None | None | None | I |
L/V | 0.0882 | likely_benign | 0.0944 | benign | -0.325 | Destabilizing | 0.002 | N | 0.126 | neutral | N | 0.449312292 | None | None | I |
L/W | 0.3294 | likely_benign | 0.3551 | ambiguous | -0.574 | Destabilizing | 0.992 | D | 0.331 | neutral | None | None | None | None | I |
L/Y | 0.4081 | ambiguous | 0.4519 | ambiguous | -0.353 | Destabilizing | 0.972 | D | 0.297 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.