Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 32352 | 97279;97280;97281 | chr2:178542800;178542799;178542798 | chr2:179407527;179407526;179407525 |
N2AB | 30711 | 92356;92357;92358 | chr2:178542800;178542799;178542798 | chr2:179407527;179407526;179407525 |
N2A | 29784 | 89575;89576;89577 | chr2:178542800;178542799;178542798 | chr2:179407527;179407526;179407525 |
N2B | 23287 | 70084;70085;70086 | chr2:178542800;178542799;178542798 | chr2:179407527;179407526;179407525 |
Novex-1 | 23412 | 70459;70460;70461 | chr2:178542800;178542799;178542798 | chr2:179407527;179407526;179407525 |
Novex-2 | 23479 | 70660;70661;70662 | chr2:178542800;178542799;178542798 | chr2:179407527;179407526;179407525 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs753874904 | -1.143 | 1.0 | N | 0.749 | 0.474 | 0.69617267371 | gnomAD-2.1.1 | 3.63E-05 | None | None | None | None | N | None | 0 | 2.60854E-04 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
R/C | rs753874904 | -1.143 | 1.0 | N | 0.749 | 0.474 | 0.69617267371 | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | N | None | 0 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/C | rs753874904 | -1.143 | 1.0 | N | 0.749 | 0.474 | 0.69617267371 | gnomAD-4.0.0 | 2.16904E-05 | None | None | None | None | N | None | 0 | 2.33396E-04 | None | 0 | 0 | None | 0 | 0 | 1.69524E-05 | 1.09789E-05 | 0 |
R/G | rs753874904 | -1.653 | 1.0 | N | 0.679 | 0.441 | 0.588775385127 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.57E-05 | None | 0 | None | 0 | 0 | 0 |
R/G | rs753874904 | -1.653 | 1.0 | N | 0.679 | 0.441 | 0.588775385127 | gnomAD-4.0.0 | 1.36843E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.03829E-05 | None | 0 | 0 | 0 | 0 | 0 |
R/H | rs575939045 | -1.619 | 1.0 | N | 0.751 | 0.37 | None | gnomAD-2.1.1 | 7.51E-05 | None | None | None | None | N | None | 0 | 1.13173E-04 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 1.09878E-04 | 2.81057E-04 |
R/H | rs575939045 | -1.619 | 1.0 | N | 0.751 | 0.37 | None | gnomAD-3.1.2 | 1.1177E-04 | None | None | None | None | N | None | 4.83E-05 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 2.05852E-04 | 0 | 0 |
R/H | rs575939045 | -1.619 | 1.0 | N | 0.751 | 0.37 | None | 1000 genomes | 3.99361E-04 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 1E-03 | None | None | None | 0 | None |
R/H | rs575939045 | -1.619 | 1.0 | N | 0.751 | 0.37 | None | gnomAD-4.0.0 | 1.50579E-04 | None | None | None | None | N | None | 2.6666E-05 | 4.99983E-05 | None | 0 | 0 | None | 1.5624E-05 | 0 | 1.95802E-04 | 1.09794E-05 | 8.0023E-05 |
R/L | rs575939045 | None | 1.0 | N | 0.679 | 0.423 | 0.575080649919 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 2.07039E-04 | 0 |
R/L | rs575939045 | None | 1.0 | N | 0.679 | 0.423 | 0.575080649919 | gnomAD-4.0.0 | 6.57471E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 2.07039E-04 | 0 |
R/S | None | None | 1.0 | N | 0.707 | 0.418 | 0.385906861911 | gnomAD-4.0.0 | 6.84216E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 1.65656E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.785 | likely_pathogenic | 0.7413 | pathogenic | -0.577 | Destabilizing | 0.999 | D | 0.513 | neutral | None | None | None | None | N |
R/C | 0.6432 | likely_pathogenic | 0.4976 | ambiguous | -0.526 | Destabilizing | 1.0 | D | 0.749 | deleterious | N | 0.500101194 | None | None | N |
R/D | 0.8069 | likely_pathogenic | 0.7956 | pathogenic | 0.055 | Stabilizing | 1.0 | D | 0.689 | prob.neutral | None | None | None | None | N |
R/E | 0.6538 | likely_pathogenic | 0.6093 | pathogenic | 0.17 | Stabilizing | 0.999 | D | 0.579 | neutral | None | None | None | None | N |
R/F | 0.8808 | likely_pathogenic | 0.8514 | pathogenic | -0.494 | Destabilizing | 1.0 | D | 0.741 | deleterious | None | None | None | None | N |
R/G | 0.6262 | likely_pathogenic | 0.5804 | pathogenic | -0.875 | Destabilizing | 1.0 | D | 0.679 | prob.neutral | N | 0.471828722 | None | None | N |
R/H | 0.2573 | likely_benign | 0.2158 | benign | -1.23 | Destabilizing | 1.0 | D | 0.751 | deleterious | N | 0.462789821 | None | None | N |
R/I | 0.6693 | likely_pathogenic | 0.5922 | pathogenic | 0.213 | Stabilizing | 1.0 | D | 0.735 | prob.delet. | None | None | None | None | N |
R/K | 0.2607 | likely_benign | 0.2419 | benign | -0.569 | Destabilizing | 0.998 | D | 0.477 | neutral | None | None | None | None | N |
R/L | 0.6151 | likely_pathogenic | 0.5584 | ambiguous | 0.213 | Stabilizing | 1.0 | D | 0.679 | prob.neutral | N | 0.476121136 | None | None | N |
R/M | 0.6919 | likely_pathogenic | 0.6204 | pathogenic | -0.138 | Destabilizing | 1.0 | D | 0.727 | prob.delet. | None | None | None | None | N |
R/N | 0.7656 | likely_pathogenic | 0.7347 | pathogenic | -0.077 | Destabilizing | 1.0 | D | 0.721 | prob.delet. | None | None | None | None | N |
R/P | 0.9131 | likely_pathogenic | 0.9089 | pathogenic | -0.029 | Destabilizing | 1.0 | D | 0.678 | prob.neutral | N | 0.499594215 | None | None | N |
R/Q | 0.2797 | likely_benign | 0.2347 | benign | -0.234 | Destabilizing | 1.0 | D | 0.709 | prob.delet. | None | None | None | None | N |
R/S | 0.8525 | likely_pathogenic | 0.8146 | pathogenic | -0.784 | Destabilizing | 1.0 | D | 0.707 | prob.neutral | N | 0.514742276 | None | None | N |
R/T | 0.6171 | likely_pathogenic | 0.5433 | ambiguous | -0.491 | Destabilizing | 1.0 | D | 0.707 | prob.neutral | None | None | None | None | N |
R/V | 0.7613 | likely_pathogenic | 0.7051 | pathogenic | -0.029 | Destabilizing | 1.0 | D | 0.713 | prob.delet. | None | None | None | None | N |
R/W | 0.4988 | ambiguous | 0.4123 | ambiguous | -0.226 | Destabilizing | 1.0 | D | 0.746 | deleterious | None | None | None | None | N |
R/Y | 0.6929 | likely_pathogenic | 0.6171 | pathogenic | 0.098 | Stabilizing | 1.0 | D | 0.707 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.