Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 32445 | 97558;97559;97560 | chr2:178542423;178542422;178542421 | chr2:179407150;179407149;179407148 |
N2AB | 30804 | 92635;92636;92637 | chr2:178542423;178542422;178542421 | chr2:179407150;179407149;179407148 |
N2A | 29877 | 89854;89855;89856 | chr2:178542423;178542422;178542421 | chr2:179407150;179407149;179407148 |
N2B | 23380 | 70363;70364;70365 | chr2:178542423;178542422;178542421 | chr2:179407150;179407149;179407148 |
Novex-1 | 23505 | 70738;70739;70740 | chr2:178542423;178542422;178542421 | chr2:179407150;179407149;179407148 |
Novex-2 | 23572 | 70939;70940;70941 | chr2:178542423;178542422;178542421 | chr2:179407150;179407149;179407148 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/L | rs1330389316 | -0.004 | 1.0 | N | 0.673 | 0.441 | 0.59105502098 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.59E-05 | None | 0 | None | 0 | 0 | 0 |
P/L | rs1330389316 | -0.004 | 1.0 | N | 0.673 | 0.441 | 0.59105502098 | gnomAD-4.0.0 | 1.59154E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.77608E-05 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/A | 0.2469 | likely_benign | 0.2206 | benign | -0.34 | Destabilizing | 1.0 | D | 0.523 | neutral | N | 0.469591564 | None | None | N |
P/C | 0.8869 | likely_pathogenic | 0.8565 | pathogenic | -0.769 | Destabilizing | 1.0 | D | 0.723 | prob.delet. | None | None | None | None | N |
P/D | 0.9041 | likely_pathogenic | 0.8854 | pathogenic | -0.338 | Destabilizing | 1.0 | D | 0.557 | neutral | None | None | None | None | N |
P/E | 0.7873 | likely_pathogenic | 0.7527 | pathogenic | -0.457 | Destabilizing | 1.0 | D | 0.562 | neutral | None | None | None | None | N |
P/F | 0.9158 | likely_pathogenic | 0.8867 | pathogenic | -0.715 | Destabilizing | 1.0 | D | 0.693 | prob.neutral | None | None | None | None | N |
P/G | 0.7269 | likely_pathogenic | 0.6986 | pathogenic | -0.4 | Destabilizing | 1.0 | D | 0.634 | neutral | None | None | None | None | N |
P/H | 0.7276 | likely_pathogenic | 0.6623 | pathogenic | 0.015 | Stabilizing | 1.0 | D | 0.654 | neutral | None | None | None | None | N |
P/I | 0.7343 | likely_pathogenic | 0.6625 | pathogenic | -0.326 | Destabilizing | 1.0 | D | 0.696 | prob.neutral | None | None | None | None | N |
P/K | 0.8423 | likely_pathogenic | 0.8087 | pathogenic | -0.377 | Destabilizing | 1.0 | D | 0.558 | neutral | None | None | None | None | N |
P/L | 0.4552 | ambiguous | 0.3758 | ambiguous | -0.326 | Destabilizing | 1.0 | D | 0.673 | neutral | N | 0.470842357 | None | None | N |
P/M | 0.7245 | likely_pathogenic | 0.6487 | pathogenic | -0.569 | Destabilizing | 1.0 | D | 0.659 | neutral | None | None | None | None | N |
P/N | 0.8368 | likely_pathogenic | 0.7963 | pathogenic | -0.16 | Destabilizing | 1.0 | D | 0.653 | neutral | None | None | None | None | N |
P/Q | 0.6256 | likely_pathogenic | 0.5591 | ambiguous | -0.382 | Destabilizing | 1.0 | D | 0.6 | neutral | N | 0.453467318 | None | None | N |
P/R | 0.6967 | likely_pathogenic | 0.658 | pathogenic | 0.082 | Stabilizing | 1.0 | D | 0.651 | neutral | N | 0.474960098 | None | None | N |
P/S | 0.5138 | ambiguous | 0.4644 | ambiguous | -0.469 | Destabilizing | 1.0 | D | 0.576 | neutral | N | 0.418797384 | None | None | N |
P/T | 0.4071 | ambiguous | 0.3555 | ambiguous | -0.498 | Destabilizing | 1.0 | D | 0.567 | neutral | N | 0.372910379 | None | None | N |
P/V | 0.5869 | likely_pathogenic | 0.507 | ambiguous | -0.303 | Destabilizing | 1.0 | D | 0.628 | neutral | None | None | None | None | N |
P/W | 0.9432 | likely_pathogenic | 0.9213 | pathogenic | -0.766 | Destabilizing | 1.0 | D | 0.713 | prob.delet. | None | None | None | None | N |
P/Y | 0.8914 | likely_pathogenic | 0.8543 | pathogenic | -0.492 | Destabilizing | 1.0 | D | 0.694 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.