Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 32507 | 97744;97745;97746 | chr2:178541558;178541557;178541556 | chr2:179406285;179406284;179406283 |
N2AB | 30866 | 92821;92822;92823 | chr2:178541558;178541557;178541556 | chr2:179406285;179406284;179406283 |
N2A | 29939 | 90040;90041;90042 | chr2:178541558;178541557;178541556 | chr2:179406285;179406284;179406283 |
N2B | 23442 | 70549;70550;70551 | chr2:178541558;178541557;178541556 | chr2:179406285;179406284;179406283 |
Novex-1 | 23567 | 70924;70925;70926 | chr2:178541558;178541557;178541556 | chr2:179406285;179406284;179406283 |
Novex-2 | 23634 | 71125;71126;71127 | chr2:178541558;178541557;178541556 | chr2:179406285;179406284;179406283 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Q/R | rs368610609 | 0.271 | 0.642 | N | 0.335 | 0.16 | None | gnomAD-2.1.1 | 4.08E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 9.02E-06 | 0 |
Q/R | rs368610609 | 0.271 | 0.642 | N | 0.335 | 0.16 | None | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 4.41E-05 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Q/A | 0.2335 | likely_benign | 0.2356 | benign | -0.376 | Destabilizing | 0.495 | N | 0.426 | neutral | None | None | None | None | I |
Q/C | 0.5241 | ambiguous | 0.5211 | ambiguous | 0.04 | Stabilizing | 0.995 | D | 0.533 | neutral | None | None | None | None | I |
Q/D | 0.2966 | likely_benign | 0.3065 | benign | 0.217 | Stabilizing | 0.329 | N | 0.359 | neutral | None | None | None | None | I |
Q/E | 0.0778 | likely_benign | 0.0803 | benign | 0.272 | Stabilizing | 0.001 | N | 0.149 | neutral | N | 0.402329209 | None | None | I |
Q/F | 0.6319 | likely_pathogenic | 0.6519 | pathogenic | -0.233 | Destabilizing | 0.944 | D | 0.531 | neutral | None | None | None | None | I |
Q/G | 0.3095 | likely_benign | 0.3128 | benign | -0.663 | Destabilizing | 0.495 | N | 0.429 | neutral | None | None | None | None | I |
Q/H | 0.1603 | likely_benign | 0.1653 | benign | -0.328 | Destabilizing | 0.927 | D | 0.477 | neutral | N | 0.488177324 | None | None | I |
Q/I | 0.3511 | ambiguous | 0.3609 | ambiguous | 0.32 | Stabilizing | 0.543 | D | 0.529 | neutral | None | None | None | None | I |
Q/K | 0.1063 | likely_benign | 0.1106 | benign | 0.006 | Stabilizing | 0.27 | N | 0.383 | neutral | N | 0.41800795 | None | None | I |
Q/L | 0.1412 | likely_benign | 0.145 | benign | 0.32 | Stabilizing | 0.27 | N | 0.431 | neutral | N | 0.494855368 | None | None | I |
Q/M | 0.3308 | likely_benign | 0.3461 | ambiguous | 0.42 | Stabilizing | 0.944 | D | 0.495 | neutral | None | None | None | None | I |
Q/N | 0.234 | likely_benign | 0.2525 | benign | -0.476 | Destabilizing | 0.031 | N | 0.18 | neutral | None | None | None | None | I |
Q/P | 0.4661 | ambiguous | 0.4829 | ambiguous | 0.119 | Stabilizing | 0.784 | D | 0.555 | neutral | D | 0.522772688 | None | None | I |
Q/R | 0.1084 | likely_benign | 0.1123 | benign | 0.11 | Stabilizing | 0.642 | D | 0.335 | neutral | N | 0.428667661 | None | None | I |
Q/S | 0.2157 | likely_benign | 0.2303 | benign | -0.572 | Destabilizing | 0.495 | N | 0.38 | neutral | None | None | None | None | I |
Q/T | 0.1756 | likely_benign | 0.1874 | benign | -0.328 | Destabilizing | 0.495 | N | 0.431 | neutral | None | None | None | None | I |
Q/V | 0.2236 | likely_benign | 0.228 | benign | 0.119 | Stabilizing | 0.031 | N | 0.365 | neutral | None | None | None | None | I |
Q/W | 0.4855 | ambiguous | 0.4822 | ambiguous | -0.138 | Destabilizing | 0.995 | D | 0.553 | neutral | None | None | None | None | I |
Q/Y | 0.3865 | ambiguous | 0.392 | ambiguous | 0.094 | Stabilizing | 0.981 | D | 0.559 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.