Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 32538 | 97837;97838;97839 | chr2:178541465;178541464;178541463 | chr2:179406192;179406191;179406190 |
N2AB | 30897 | 92914;92915;92916 | chr2:178541465;178541464;178541463 | chr2:179406192;179406191;179406190 |
N2A | 29970 | 90133;90134;90135 | chr2:178541465;178541464;178541463 | chr2:179406192;179406191;179406190 |
N2B | 23473 | 70642;70643;70644 | chr2:178541465;178541464;178541463 | chr2:179406192;179406191;179406190 |
Novex-1 | 23598 | 71017;71018;71019 | chr2:178541465;178541464;178541463 | chr2:179406192;179406191;179406190 |
Novex-2 | 23665 | 71218;71219;71220 | chr2:178541465;178541464;178541463 | chr2:179406192;179406191;179406190 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs761050391 | -1.608 | 1.0 | N | 0.873 | 0.47 | 0.434716162284 | gnomAD-2.1.1 | 1.24785E-04 | None | None | None | None | N | None | 0 | 5.81E-05 | None | 0 | 5.59E-05 | None | 8.51064E-04 | None | 0 | 1.78E-05 | 0 |
R/C | rs761050391 | -1.608 | 1.0 | N | 0.873 | 0.47 | 0.434716162284 | gnomAD-3.1.2 | 3.29E-05 | None | None | None | None | N | None | 0 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 8.28157E-04 | 0 |
R/C | rs761050391 | -1.608 | 1.0 | N | 0.873 | 0.47 | 0.434716162284 | gnomAD-4.0.0 | 5.45485E-05 | None | None | None | None | N | None | 0 | 6.67089E-05 | None | 0 | 2.23015E-05 | None | 0 | 4.93421E-04 | 6.78214E-06 | 7.46826E-04 | 6.40677E-05 |
R/H | rs3731749 | -1.877 | 1.0 | N | 0.836 | 0.482 | None | gnomAD-2.1.1 | 1.71898E-01 | None | None | None | None | N | None | 7.14108E-02 | 1.45161E-01 | None | 1.68765E-01 | 4.29855E-01 | None | 2.53193E-01 | None | 1.51237E-01 | 1.44664E-01 | 1.60231E-01 |
R/H | rs3731749 | -1.877 | 1.0 | N | 0.836 | 0.482 | None | gnomAD-3.1.2 | 1.41555E-01 | None | None | None | None | N | None | 7.53709E-02 | 1.28015E-01 | 4.72588E-01 | 1.70317E-01 | 4.40411E-01 | None | 1.62656E-01 | 1.13924E-01 | 1.45474E-01 | 2.56841E-01 | 1.25958E-01 |
R/H | rs3731749 | -1.877 | 1.0 | N | 0.836 | 0.482 | None | 1000 genomes | 2.09265E-01 | None | None | None | None | N | None | 6.66E-02 | 1.484E-01 | None | None | 4.514E-01 | 1.382E-01 | None | None | None | 2.689E-01 | None |
R/H | rs3731749 | -1.877 | 1.0 | N | 0.836 | 0.482 | None | gnomAD-4.0.0 | 1.52606E-01 | None | None | None | None | N | None | 7.34376E-02 | 1.40731E-01 | None | 1.68007E-01 | 4.34368E-01 | None | 1.53036E-01 | 1.25372E-01 | 1.38994E-01 | 2.50687E-01 | 1.61359E-01 |
R/L | rs3731749 | None | 1.0 | N | 0.831 | 0.468 | 0.367042808489 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 2.42E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/L | rs3731749 | None | 1.0 | N | 0.831 | 0.468 | 0.367042808489 | gnomAD-4.0.0 | 6.58033E-06 | None | None | None | None | N | None | 2.41616E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.9266 | likely_pathogenic | 0.9372 | pathogenic | -1.756 | Destabilizing | 0.999 | D | 0.701 | prob.neutral | None | None | None | None | N |
R/C | 0.3724 | ambiguous | 0.3975 | ambiguous | -1.64 | Destabilizing | 1.0 | D | 0.873 | deleterious | N | 0.482481146 | None | None | N |
R/D | 0.9894 | likely_pathogenic | 0.9904 | pathogenic | -0.678 | Destabilizing | 1.0 | D | 0.861 | deleterious | None | None | None | None | N |
R/E | 0.86 | likely_pathogenic | 0.8631 | pathogenic | -0.451 | Destabilizing | 0.999 | D | 0.712 | prob.delet. | None | None | None | None | N |
R/F | 0.9203 | likely_pathogenic | 0.9293 | pathogenic | -0.945 | Destabilizing | 1.0 | D | 0.887 | deleterious | None | None | None | None | N |
R/G | 0.875 | likely_pathogenic | 0.8788 | pathogenic | -2.143 | Highly Destabilizing | 1.0 | D | 0.831 | deleterious | N | 0.478521581 | None | None | N |
R/H | 0.3348 | likely_benign | 0.3343 | benign | -1.867 | Destabilizing | 1.0 | D | 0.836 | deleterious | N | 0.472178479 | None | None | N |
R/I | 0.7949 | likely_pathogenic | 0.8232 | pathogenic | -0.641 | Destabilizing | 1.0 | D | 0.886 | deleterious | None | None | None | None | N |
R/K | 0.2001 | likely_benign | 0.2144 | benign | -1.109 | Destabilizing | 0.998 | D | 0.623 | neutral | None | None | None | None | N |
R/L | 0.7717 | likely_pathogenic | 0.7956 | pathogenic | -0.641 | Destabilizing | 1.0 | D | 0.831 | deleterious | N | 0.516265216 | None | None | N |
R/M | 0.6911 | likely_pathogenic | 0.7332 | pathogenic | -1.119 | Destabilizing | 1.0 | D | 0.846 | deleterious | None | None | None | None | N |
R/N | 0.9663 | likely_pathogenic | 0.9701 | pathogenic | -1.133 | Destabilizing | 1.0 | D | 0.813 | deleterious | None | None | None | None | N |
R/P | 0.9984 | likely_pathogenic | 0.9987 | pathogenic | -0.999 | Destabilizing | 1.0 | D | 0.871 | deleterious | N | 0.496879326 | None | None | N |
R/Q | 0.2065 | likely_benign | 0.2057 | benign | -1.032 | Destabilizing | 1.0 | D | 0.821 | deleterious | None | None | None | None | N |
R/S | 0.9437 | likely_pathogenic | 0.9482 | pathogenic | -2.085 | Highly Destabilizing | 1.0 | D | 0.814 | deleterious | N | 0.467645802 | None | None | N |
R/T | 0.8534 | likely_pathogenic | 0.8723 | pathogenic | -1.627 | Destabilizing | 1.0 | D | 0.811 | deleterious | None | None | None | None | N |
R/V | 0.8374 | likely_pathogenic | 0.8559 | pathogenic | -0.999 | Destabilizing | 1.0 | D | 0.859 | deleterious | None | None | None | None | N |
R/W | 0.483 | ambiguous | 0.501 | ambiguous | -0.404 | Destabilizing | 1.0 | D | 0.845 | deleterious | None | None | None | None | N |
R/Y | 0.7582 | likely_pathogenic | 0.7728 | pathogenic | -0.26 | Destabilizing | 1.0 | D | 0.885 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.