Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 3257 | 9994;9995;9996 | chr2:178764746;178764745;178764744 | chr2:179629473;179629472;179629471 |
N2AB | 3257 | 9994;9995;9996 | chr2:178764746;178764745;178764744 | chr2:179629473;179629472;179629471 |
N2A | 3257 | 9994;9995;9996 | chr2:178764746;178764745;178764744 | chr2:179629473;179629472;179629471 |
N2B | 3211 | 9856;9857;9858 | chr2:178764746;178764745;178764744 | chr2:179629473;179629472;179629471 |
Novex-1 | 3211 | 9856;9857;9858 | chr2:178764746;178764745;178764744 | chr2:179629473;179629472;179629471 |
Novex-2 | 3211 | 9856;9857;9858 | chr2:178764746;178764745;178764744 | chr2:179629473;179629472;179629471 |
Novex-3 | 3257 | 9994;9995;9996 | chr2:178764746;178764745;178764744 | chr2:179629473;179629472;179629471 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs374521620 | -0.522 | 1.0 | D | 0.757 | 0.801 | 0.800107164582 | gnomAD-2.1.1 | 3.59E-05 | None | None | None | None | N | None | 0 | 1.44642E-04 | None | 0 | 0 | None | 0 | None | 0 | 2.65E-05 | 1.63613E-04 |
R/C | rs374521620 | -0.522 | 1.0 | D | 0.757 | 0.801 | 0.800107164582 | gnomAD-4.0.0 | 6.15723E-06 | None | None | None | None | N | None | 0 | 1.11822E-04 | None | 0 | 0 | None | 0 | 0 | 1.79865E-06 | 1.15942E-05 | 1.6564E-05 |
R/G | None | None | 1.0 | D | 0.699 | 0.846 | 0.781155158808 | gnomAD-4.0.0 | 6.84137E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99323E-07 | 0 | 0 |
R/H | rs535876380 | -1.214 | 1.0 | N | 0.746 | 0.672 | 0.446510307777 | gnomAD-2.1.1 | 3.19E-05 | None | None | None | None | N | None | 6.15E-05 | 8.68E-05 | None | 0 | 0 | None | 0 | None | 0 | 3.53E-05 | 0 |
R/H | rs535876380 | -1.214 | 1.0 | N | 0.746 | 0.672 | 0.446510307777 | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 2.41E-05 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 2.07211E-04 | 0 |
R/H | rs535876380 | -1.214 | 1.0 | N | 0.746 | 0.672 | 0.446510307777 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
R/H | rs535876380 | -1.214 | 1.0 | N | 0.746 | 0.672 | 0.446510307777 | gnomAD-4.0.0 | 7.06306E-05 | None | None | None | None | N | None | 1.3328E-05 | 6.66511E-05 | None | 0 | 0 | None | 0 | 0 | 8.98313E-05 | 1.09801E-05 | 3.20061E-05 |
R/S | rs374521620 | -0.69 | 1.0 | N | 0.729 | 0.782 | None | gnomAD-2.1.1 | 1.99E-05 | None | None | None | None | N | None | 0 | 5.79E-05 | None | 0 | 0 | None | 0 | None | 0 | 2.65E-05 | 0 |
R/S | rs374521620 | -0.69 | 1.0 | N | 0.729 | 0.782 | None | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 0 | 1.30941E-04 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/S | rs374521620 | -0.69 | 1.0 | N | 0.729 | 0.782 | None | gnomAD-4.0.0 | 1.30125E-05 | None | None | None | None | N | None | 0 | 1.0002E-04 | None | 0 | 0 | None | 0 | 0 | 1.27121E-05 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.8654 | likely_pathogenic | 0.9352 | pathogenic | -0.103 | Destabilizing | 0.999 | D | 0.633 | neutral | None | None | None | None | N |
R/C | 0.468 | ambiguous | 0.6852 | pathogenic | -0.244 | Destabilizing | 1.0 | D | 0.757 | deleterious | D | 0.614298754 | None | None | N |
R/D | 0.9653 | likely_pathogenic | 0.9849 | pathogenic | -0.024 | Destabilizing | 1.0 | D | 0.717 | prob.delet. | None | None | None | None | N |
R/E | 0.7779 | likely_pathogenic | 0.8758 | pathogenic | 0.078 | Stabilizing | 0.999 | D | 0.638 | neutral | None | None | None | None | N |
R/F | 0.91 | likely_pathogenic | 0.9594 | pathogenic | -0.152 | Destabilizing | 1.0 | D | 0.74 | deleterious | None | None | None | None | N |
R/G | 0.8364 | likely_pathogenic | 0.9275 | pathogenic | -0.356 | Destabilizing | 1.0 | D | 0.699 | prob.neutral | D | 0.665218711 | None | None | N |
R/H | 0.237 | likely_benign | 0.4263 | ambiguous | -0.881 | Destabilizing | 1.0 | D | 0.746 | deleterious | N | 0.513096016 | None | None | N |
R/I | 0.7059 | likely_pathogenic | 0.8096 | pathogenic | 0.544 | Stabilizing | 1.0 | D | 0.743 | deleterious | None | None | None | None | N |
R/K | 0.2878 | likely_benign | 0.4045 | ambiguous | -0.148 | Destabilizing | 0.998 | D | 0.519 | neutral | None | None | None | None | N |
R/L | 0.6494 | likely_pathogenic | 0.7819 | pathogenic | 0.544 | Stabilizing | 1.0 | D | 0.699 | prob.neutral | N | 0.518441285 | None | None | N |
R/M | 0.7995 | likely_pathogenic | 0.8904 | pathogenic | 0.004 | Stabilizing | 1.0 | D | 0.744 | deleterious | None | None | None | None | N |
R/N | 0.9178 | likely_pathogenic | 0.9638 | pathogenic | 0.064 | Stabilizing | 1.0 | D | 0.746 | deleterious | None | None | None | None | N |
R/P | 0.9779 | likely_pathogenic | 0.9914 | pathogenic | 0.35 | Stabilizing | 1.0 | D | 0.715 | prob.delet. | D | 0.704105458 | None | None | N |
R/Q | 0.2276 | likely_benign | 0.3996 | ambiguous | 0.012 | Stabilizing | 1.0 | D | 0.756 | deleterious | None | None | None | None | N |
R/S | 0.8467 | likely_pathogenic | 0.9287 | pathogenic | -0.36 | Destabilizing | 1.0 | D | 0.729 | prob.delet. | N | 0.518302105 | None | None | N |
R/T | 0.6987 | likely_pathogenic | 0.8408 | pathogenic | -0.095 | Destabilizing | 1.0 | D | 0.724 | prob.delet. | None | None | None | None | N |
R/V | 0.7218 | likely_pathogenic | 0.8188 | pathogenic | 0.35 | Stabilizing | 1.0 | D | 0.731 | prob.delet. | None | None | None | None | N |
R/W | 0.5275 | ambiguous | 0.7388 | pathogenic | -0.119 | Destabilizing | 1.0 | D | 0.753 | deleterious | None | None | None | None | N |
R/Y | 0.7564 | likely_pathogenic | 0.8927 | pathogenic | 0.267 | Stabilizing | 1.0 | D | 0.738 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.