Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 32573 | 97942;97943;97944 | chr2:178541360;178541359;178541358 | chr2:179406087;179406086;179406085 |
N2AB | 30932 | 93019;93020;93021 | chr2:178541360;178541359;178541358 | chr2:179406087;179406086;179406085 |
N2A | 30005 | 90238;90239;90240 | chr2:178541360;178541359;178541358 | chr2:179406087;179406086;179406085 |
N2B | 23508 | 70747;70748;70749 | chr2:178541360;178541359;178541358 | chr2:179406087;179406086;179406085 |
Novex-1 | 23633 | 71122;71123;71124 | chr2:178541360;178541359;178541358 | chr2:179406087;179406086;179406085 |
Novex-2 | 23700 | 71323;71324;71325 | chr2:178541360;178541359;178541358 | chr2:179406087;179406086;179406085 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs569593251 | -1.463 | 1.0 | D | 0.825 | 0.558 | None | gnomAD-2.1.1 | 6.15E-05 | None | None | None | None | N | None | 7.09E-05 | 3.11E-05 | None | 0 | 0 | None | 2.13569E-04 | None | 0 | 4.93E-05 | 1.78126E-04 |
R/C | rs569593251 | -1.463 | 1.0 | D | 0.825 | 0.558 | None | gnomAD-3.1.2 | 7.89E-05 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 1.92456E-04 | None | 0 | 0 | 7.35E-05 | 1.03563E-03 | 0 |
R/C | rs569593251 | -1.463 | 1.0 | D | 0.825 | 0.558 | None | 1000 genomes | 3.99361E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 2E-03 | None |
R/C | rs569593251 | -1.463 | 1.0 | D | 0.825 | 0.558 | None | gnomAD-4.0.0 | 5.88108E-05 | None | None | None | None | N | None | 2.67294E-05 | 1.71597E-05 | None | 0 | 9.05674E-05 | None | 1.58725E-05 | 0 | 5.37826E-05 | 2.14423E-04 | 6.46412E-05 |
R/H | rs776377343 | -2.008 | 1.0 | D | 0.826 | 0.532 | None | gnomAD-2.1.1 | 1.94E-05 | None | None | None | None | N | None | 4.39E-05 | 3.05E-05 | None | 0 | 0 | None | 7.15E-05 | None | 0 | 8.62E-06 | 0 |
R/H | rs776377343 | -2.008 | 1.0 | D | 0.826 | 0.532 | None | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/H | rs776377343 | -2.008 | 1.0 | D | 0.826 | 0.532 | None | gnomAD-4.0.0 | 1.7529E-05 | None | None | None | None | N | None | 2.6773E-05 | 1.72159E-05 | None | 0 | 2.26162E-05 | None | 0 | 0 | 1.62272E-05 | 4.52008E-05 | 1.61697E-05 |
R/L | None | None | 1.0 | N | 0.732 | 0.548 | 0.646940692236 | gnomAD-4.0.0 | 6.91943E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.56279E-05 | None | 0 | 0 | 0 | 0 | 0 |
R/S | None | None | 1.0 | N | 0.734 | 0.504 | 0.487772906946 | gnomAD-4.0.0 | 6.91508E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 9.06318E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.9127 | likely_pathogenic | 0.9224 | pathogenic | -2.026 | Highly Destabilizing | 0.999 | D | 0.618 | neutral | None | None | None | None | N |
R/C | 0.3823 | ambiguous | 0.4026 | ambiguous | -1.932 | Destabilizing | 1.0 | D | 0.825 | deleterious | D | 0.528068768 | None | None | N |
R/D | 0.9934 | likely_pathogenic | 0.994 | pathogenic | -1.027 | Destabilizing | 1.0 | D | 0.785 | deleterious | None | None | None | None | N |
R/E | 0.9046 | likely_pathogenic | 0.911 | pathogenic | -0.805 | Destabilizing | 0.999 | D | 0.672 | neutral | None | None | None | None | N |
R/F | 0.9084 | likely_pathogenic | 0.9164 | pathogenic | -1.199 | Destabilizing | 1.0 | D | 0.848 | deleterious | None | None | None | None | N |
R/G | 0.926 | likely_pathogenic | 0.9422 | pathogenic | -2.373 | Highly Destabilizing | 1.0 | D | 0.732 | prob.delet. | D | 0.550692474 | None | None | N |
R/H | 0.2474 | likely_benign | 0.2688 | benign | -2.196 | Highly Destabilizing | 1.0 | D | 0.826 | deleterious | D | 0.528068768 | None | None | N |
R/I | 0.7483 | likely_pathogenic | 0.7755 | pathogenic | -1.015 | Destabilizing | 1.0 | D | 0.831 | deleterious | None | None | None | None | N |
R/K | 0.2589 | likely_benign | 0.2909 | benign | -1.369 | Destabilizing | 0.998 | D | 0.639 | neutral | None | None | None | None | N |
R/L | 0.7055 | likely_pathogenic | 0.7362 | pathogenic | -1.015 | Destabilizing | 1.0 | D | 0.732 | prob.delet. | N | 0.514737453 | None | None | N |
R/M | 0.7348 | likely_pathogenic | 0.7737 | pathogenic | -1.528 | Destabilizing | 1.0 | D | 0.815 | deleterious | None | None | None | None | N |
R/N | 0.968 | likely_pathogenic | 0.9735 | pathogenic | -1.394 | Destabilizing | 1.0 | D | 0.781 | deleterious | None | None | None | None | N |
R/P | 0.9986 | likely_pathogenic | 0.9988 | pathogenic | -1.341 | Destabilizing | 1.0 | D | 0.798 | deleterious | D | 0.551199453 | None | None | N |
R/Q | 0.2394 | likely_benign | 0.2642 | benign | -1.225 | Destabilizing | 1.0 | D | 0.785 | deleterious | None | None | None | None | N |
R/S | 0.9515 | likely_pathogenic | 0.9587 | pathogenic | -2.275 | Highly Destabilizing | 1.0 | D | 0.734 | prob.delet. | N | 0.509378175 | None | None | N |
R/T | 0.8604 | likely_pathogenic | 0.8832 | pathogenic | -1.838 | Destabilizing | 1.0 | D | 0.732 | prob.delet. | None | None | None | None | N |
R/V | 0.7916 | likely_pathogenic | 0.8126 | pathogenic | -1.341 | Destabilizing | 1.0 | D | 0.799 | deleterious | None | None | None | None | N |
R/W | 0.5465 | ambiguous | 0.5904 | pathogenic | -0.726 | Destabilizing | 1.0 | D | 0.799 | deleterious | None | None | None | None | N |
R/Y | 0.8167 | likely_pathogenic | 0.8394 | pathogenic | -0.592 | Destabilizing | 1.0 | D | 0.831 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.