Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 32617 | 98074;98075;98076 | chr2:178540317;178540316;178540315 | chr2:179405044;179405043;179405042 |
N2AB | 30976 | 93151;93152;93153 | chr2:178540317;178540316;178540315 | chr2:179405044;179405043;179405042 |
N2A | 30049 | 90370;90371;90372 | chr2:178540317;178540316;178540315 | chr2:179405044;179405043;179405042 |
N2B | 23552 | 70879;70880;70881 | chr2:178540317;178540316;178540315 | chr2:179405044;179405043;179405042 |
Novex-1 | 23677 | 71254;71255;71256 | chr2:178540317;178540316;178540315 | chr2:179405044;179405043;179405042 |
Novex-2 | 23744 | 71455;71456;71457 | chr2:178540317;178540316;178540315 | chr2:179405044;179405043;179405042 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | rs398124461 | -2.61 | 0.939 | N | 0.617 | 0.283 | None | gnomAD-2.1.1 | 1.07E-05 | None | None | None | None | N | None | 0 | 2.83E-05 | None | 0 | 0 | None | 0 | None | 0 | 1.56E-05 | 0 |
V/A | rs398124461 | -2.61 | 0.939 | N | 0.617 | 0.283 | None | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
V/A | rs398124461 | -2.61 | 0.939 | N | 0.617 | 0.283 | None | gnomAD-4.0.0 | 1.11555E-05 | None | None | None | None | N | None | 0 | 1.66722E-05 | None | 0 | 0 | None | 0 | 0 | 1.44103E-05 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.6795 | likely_pathogenic | 0.6442 | pathogenic | -2.284 | Highly Destabilizing | 0.939 | D | 0.617 | neutral | N | 0.491065701 | None | None | N |
V/C | 0.916 | likely_pathogenic | 0.9051 | pathogenic | -2.65 | Highly Destabilizing | 0.999 | D | 0.817 | deleterious | None | None | None | None | N |
V/D | 0.9983 | likely_pathogenic | 0.9982 | pathogenic | -2.695 | Highly Destabilizing | 0.997 | D | 0.875 | deleterious | D | 0.542463267 | None | None | N |
V/E | 0.9949 | likely_pathogenic | 0.9946 | pathogenic | -2.42 | Highly Destabilizing | 0.998 | D | 0.875 | deleterious | None | None | None | None | N |
V/F | 0.8597 | likely_pathogenic | 0.8308 | pathogenic | -1.48 | Destabilizing | 0.982 | D | 0.849 | deleterious | N | 0.50207402 | None | None | N |
V/G | 0.9341 | likely_pathogenic | 0.9269 | pathogenic | -2.86 | Highly Destabilizing | 0.997 | D | 0.873 | deleterious | D | 0.530093003 | None | None | N |
V/H | 0.9979 | likely_pathogenic | 0.9976 | pathogenic | -2.602 | Highly Destabilizing | 0.999 | D | 0.868 | deleterious | None | None | None | None | N |
V/I | 0.1008 | likely_benign | 0.0994 | benign | -0.633 | Destabilizing | 0.046 | N | 0.201 | neutral | N | 0.486081169 | None | None | N |
V/K | 0.9957 | likely_pathogenic | 0.9954 | pathogenic | -1.802 | Destabilizing | 0.993 | D | 0.873 | deleterious | None | None | None | None | N |
V/L | 0.6271 | likely_pathogenic | 0.5839 | pathogenic | -0.633 | Destabilizing | 0.76 | D | 0.487 | neutral | N | 0.515763784 | None | None | N |
V/M | 0.7146 | likely_pathogenic | 0.6612 | pathogenic | -1.237 | Destabilizing | 0.986 | D | 0.751 | deleterious | None | None | None | None | N |
V/N | 0.9922 | likely_pathogenic | 0.9912 | pathogenic | -2.319 | Highly Destabilizing | 0.998 | D | 0.891 | deleterious | None | None | None | None | N |
V/P | 0.9972 | likely_pathogenic | 0.9974 | pathogenic | -1.162 | Destabilizing | 0.998 | D | 0.878 | deleterious | None | None | None | None | N |
V/Q | 0.9923 | likely_pathogenic | 0.9917 | pathogenic | -2.057 | Highly Destabilizing | 0.998 | D | 0.886 | deleterious | None | None | None | None | N |
V/R | 0.9895 | likely_pathogenic | 0.9893 | pathogenic | -1.828 | Destabilizing | 0.998 | D | 0.891 | deleterious | None | None | None | None | N |
V/S | 0.9531 | likely_pathogenic | 0.9429 | pathogenic | -3.041 | Highly Destabilizing | 0.993 | D | 0.869 | deleterious | None | None | None | None | N |
V/T | 0.8803 | likely_pathogenic | 0.8528 | pathogenic | -2.591 | Highly Destabilizing | 0.953 | D | 0.707 | prob.neutral | None | None | None | None | N |
V/W | 0.9983 | likely_pathogenic | 0.9983 | pathogenic | -1.817 | Destabilizing | 0.999 | D | 0.842 | deleterious | None | None | None | None | N |
V/Y | 0.9888 | likely_pathogenic | 0.9871 | pathogenic | -1.521 | Destabilizing | 0.998 | D | 0.848 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.