Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 32791 | 98596;98597;98598 | chr2:178539694;178539693;178539692 | chr2:179404421;179404420;179404419 |
N2AB | 31150 | 93673;93674;93675 | chr2:178539694;178539693;178539692 | chr2:179404421;179404420;179404419 |
N2A | 30223 | 90892;90893;90894 | chr2:178539694;178539693;178539692 | chr2:179404421;179404420;179404419 |
N2B | 23726 | 71401;71402;71403 | chr2:178539694;178539693;178539692 | chr2:179404421;179404420;179404419 |
Novex-1 | 23851 | 71776;71777;71778 | chr2:178539694;178539693;178539692 | chr2:179404421;179404420;179404419 |
Novex-2 | 23918 | 71977;71978;71979 | chr2:178539694;178539693;178539692 | chr2:179404421;179404420;179404419 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/S | None | None | 0.062 | N | 0.431 | 0.093 | 0.250579442822 | gnomAD-4.0.0 | 6.84227E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 1.65645E-05 |
R/T | None | None | 0.117 | N | 0.444 | 0.08 | 0.254761474806 | gnomAD-4.0.0 | 1.20032E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.3125E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.3559 | ambiguous | 0.4003 | ambiguous | -0.488 | Destabilizing | 0.035 | N | 0.435 | neutral | None | None | None | None | N |
R/C | 0.2373 | likely_benign | 0.2357 | benign | -0.654 | Destabilizing | 0.001 | N | 0.393 | neutral | None | None | None | None | N |
R/D | 0.5769 | likely_pathogenic | 0.6226 | pathogenic | 0.078 | Stabilizing | 0.149 | N | 0.433 | neutral | None | None | None | None | N |
R/E | 0.3057 | likely_benign | 0.3334 | benign | 0.199 | Stabilizing | 0.081 | N | 0.381 | neutral | None | None | None | None | N |
R/F | 0.6266 | likely_pathogenic | 0.647 | pathogenic | -0.483 | Destabilizing | 0.791 | D | 0.423 | neutral | None | None | None | None | N |
R/G | 0.3426 | ambiguous | 0.3649 | ambiguous | -0.752 | Destabilizing | 0.117 | N | 0.467 | neutral | N | 0.489491445 | None | None | N |
R/H | 0.1135 | likely_benign | 0.1106 | benign | -1.121 | Destabilizing | 0.555 | D | 0.445 | neutral | None | None | None | None | N |
R/I | 0.282 | likely_benign | 0.3102 | benign | 0.202 | Stabilizing | 0.555 | D | 0.429 | neutral | None | None | None | None | N |
R/K | 0.069 | likely_benign | 0.0733 | benign | -0.372 | Destabilizing | None | N | 0.167 | neutral | N | 0.418000455 | None | None | N |
R/L | 0.2734 | likely_benign | 0.3021 | benign | 0.202 | Stabilizing | 0.149 | N | 0.453 | neutral | None | None | None | None | N |
R/M | 0.232 | likely_benign | 0.2623 | benign | -0.313 | Destabilizing | 0.741 | D | 0.433 | neutral | N | 0.489998424 | None | None | N |
R/N | 0.4018 | ambiguous | 0.4387 | ambiguous | -0.191 | Destabilizing | 0.149 | N | 0.423 | neutral | None | None | None | None | N |
R/P | 0.9237 | likely_pathogenic | 0.9359 | pathogenic | -0.008 | Destabilizing | 0.555 | D | 0.41 | neutral | None | None | None | None | N |
R/Q | 0.1005 | likely_benign | 0.1028 | benign | -0.252 | Destabilizing | 0.081 | N | 0.434 | neutral | None | None | None | None | N |
R/S | 0.3824 | ambiguous | 0.4213 | ambiguous | -0.813 | Destabilizing | 0.062 | N | 0.431 | neutral | N | 0.479993063 | None | None | N |
R/T | 0.1612 | likely_benign | 0.1941 | benign | -0.513 | Destabilizing | 0.117 | N | 0.444 | neutral | N | 0.4497848 | None | None | N |
R/V | 0.3288 | likely_benign | 0.3694 | ambiguous | -0.008 | Destabilizing | 0.149 | N | 0.467 | neutral | None | None | None | None | N |
R/W | 0.2585 | likely_benign | 0.2662 | benign | -0.334 | Destabilizing | 0.915 | D | 0.469 | neutral | N | 0.490251913 | None | None | N |
R/Y | 0.4811 | ambiguous | 0.4936 | ambiguous | 0.013 | Stabilizing | 0.791 | D | 0.425 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.