Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 32869 | 98830;98831;98832 | chr2:178539460;178539459;178539458 | chr2:179404187;179404186;179404185 |
N2AB | 31228 | 93907;93908;93909 | chr2:178539460;178539459;178539458 | chr2:179404187;179404186;179404185 |
N2A | 30301 | 91126;91127;91128 | chr2:178539460;178539459;178539458 | chr2:179404187;179404186;179404185 |
N2B | 23804 | 71635;71636;71637 | chr2:178539460;178539459;178539458 | chr2:179404187;179404186;179404185 |
Novex-1 | 23929 | 72010;72011;72012 | chr2:178539460;178539459;178539458 | chr2:179404187;179404186;179404185 |
Novex-2 | 23996 | 72211;72212;72213 | chr2:178539460;178539459;178539458 | chr2:179404187;179404186;179404185 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs186244950 | -1.569 | 1.0 | D | 0.726 | 0.516 | None | gnomAD-2.1.1 | 2.14021E-04 | None | None | None | None | N | None | 2.47954E-04 | 0 | None | 2.8041E-03 | 0 | None | 3.92182E-04 | None | 0 | 8.58E-05 | 2.80348E-04 |
R/C | rs186244950 | -1.569 | 1.0 | D | 0.726 | 0.516 | None | gnomAD-3.1.2 | 1.2489E-04 | None | None | None | None | N | None | 1.69E-04 | 6.54E-05 | 0 | 2.30814E-03 | 0 | None | 0 | 0 | 4.41E-05 | 0 | 0 |
R/C | rs186244950 | -1.569 | 1.0 | D | 0.726 | 0.516 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/C | rs186244950 | -1.569 | 1.0 | D | 0.726 | 0.516 | None | gnomAD-4.0.0 | 1.19593E-04 | None | None | None | None | N | None | 2.533E-04 | 1.66611E-05 | None | 2.29761E-03 | 0 | None | 0 | 0 | 4.06858E-05 | 4.83092E-04 | 2.0808E-04 |
R/H | rs587780495 | -2.051 | 1.0 | N | 0.58 | 0.433 | 0.324161360171 | gnomAD-2.1.1 | 4.64E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 1.0248E-04 | None | 2.94137E-04 | None | 0 | 7.8E-06 | 1.40135E-04 |
R/H | rs587780495 | -2.051 | 1.0 | N | 0.58 | 0.433 | 0.324161360171 | gnomAD-3.1.2 | 5.26E-05 | None | None | None | None | N | None | 0 | 6.54E-05 | 0 | 0 | 1.92456E-04 | None | 0 | 0 | 2.94E-05 | 8.28157E-04 | 0 |
R/H | rs587780495 | -2.051 | 1.0 | N | 0.58 | 0.433 | 0.324161360171 | gnomAD-4.0.0 | 2.78837E-05 | None | None | None | None | N | None | 0 | 1.66617E-05 | None | 0 | 6.68479E-05 | None | 0 | 3.30142E-04 | 5.93327E-06 | 3.18394E-04 | 4.80169E-05 |
R/L | None | None | 0.992 | N | 0.553 | 0.396 | 0.639907133395 | gnomAD-4.0.0 | 1.3684E-06 | None | None | None | None | N | None | 0 | 4.47247E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.8292 | likely_pathogenic | 0.7671 | pathogenic | -1.788 | Destabilizing | 0.97 | D | 0.52 | neutral | None | None | None | None | N |
R/C | 0.3424 | ambiguous | 0.283 | benign | -1.727 | Destabilizing | 1.0 | D | 0.726 | prob.delet. | D | 0.528067271 | None | None | N |
R/D | 0.9899 | likely_pathogenic | 0.9851 | pathogenic | -0.97 | Destabilizing | 0.996 | D | 0.603 | neutral | None | None | None | None | N |
R/E | 0.873 | likely_pathogenic | 0.8269 | pathogenic | -0.746 | Destabilizing | 0.97 | D | 0.517 | neutral | None | None | None | None | N |
R/F | 0.9119 | likely_pathogenic | 0.8817 | pathogenic | -0.886 | Destabilizing | 0.999 | D | 0.731 | prob.delet. | None | None | None | None | N |
R/G | 0.8391 | likely_pathogenic | 0.7752 | pathogenic | -2.144 | Highly Destabilizing | 0.992 | D | 0.553 | neutral | D | 0.527560292 | None | None | N |
R/H | 0.2986 | likely_benign | 0.2662 | benign | -1.915 | Destabilizing | 1.0 | D | 0.58 | neutral | N | 0.516203986 | None | None | N |
R/I | 0.6869 | likely_pathogenic | 0.633 | pathogenic | -0.754 | Destabilizing | 0.999 | D | 0.719 | prob.delet. | None | None | None | None | N |
R/K | 0.2388 | likely_benign | 0.2074 | benign | -1.223 | Destabilizing | 0.155 | N | 0.269 | neutral | None | None | None | None | N |
R/L | 0.6301 | likely_pathogenic | 0.5601 | ambiguous | -0.754 | Destabilizing | 0.992 | D | 0.553 | neutral | N | 0.508188589 | None | None | N |
R/M | 0.6906 | likely_pathogenic | 0.6172 | pathogenic | -1.301 | Destabilizing | 1.0 | D | 0.632 | neutral | None | None | None | None | N |
R/N | 0.961 | likely_pathogenic | 0.9476 | pathogenic | -1.334 | Destabilizing | 0.996 | D | 0.521 | neutral | None | None | None | None | N |
R/P | 0.9963 | likely_pathogenic | 0.9965 | pathogenic | -1.087 | Destabilizing | 0.999 | D | 0.681 | prob.neutral | D | 0.539334671 | None | None | N |
R/Q | 0.2327 | likely_benign | 0.1945 | benign | -1.126 | Destabilizing | 0.991 | D | 0.547 | neutral | None | None | None | None | N |
R/S | 0.8934 | likely_pathogenic | 0.8497 | pathogenic | -2.142 | Highly Destabilizing | 0.984 | D | 0.519 | neutral | N | 0.496071815 | None | None | N |
R/T | 0.7586 | likely_pathogenic | 0.6953 | pathogenic | -1.705 | Destabilizing | 0.985 | D | 0.523 | neutral | None | None | None | None | N |
R/V | 0.7502 | likely_pathogenic | 0.6903 | pathogenic | -1.087 | Destabilizing | 0.996 | D | 0.675 | neutral | None | None | None | None | N |
R/W | 0.545 | ambiguous | 0.4801 | ambiguous | -0.451 | Destabilizing | 1.0 | D | 0.679 | prob.neutral | None | None | None | None | N |
R/Y | 0.8314 | likely_pathogenic | 0.7877 | pathogenic | -0.309 | Destabilizing | 0.999 | D | 0.701 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.