Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 3289 | 10090;10091;10092 | chr2:178764650;178764649;178764648 | chr2:179629377;179629376;179629375 |
N2AB | 3289 | 10090;10091;10092 | chr2:178764650;178764649;178764648 | chr2:179629377;179629376;179629375 |
N2A | 3289 | 10090;10091;10092 | chr2:178764650;178764649;178764648 | chr2:179629377;179629376;179629375 |
N2B | 3243 | 9952;9953;9954 | chr2:178764650;178764649;178764648 | chr2:179629377;179629376;179629375 |
Novex-1 | 3243 | 9952;9953;9954 | chr2:178764650;178764649;178764648 | chr2:179629377;179629376;179629375 |
Novex-2 | 3243 | 9952;9953;9954 | chr2:178764650;178764649;178764648 | chr2:179629377;179629376;179629375 |
Novex-3 | 3289 | 10090;10091;10092 | chr2:178764650;178764649;178764648 | chr2:179629377;179629376;179629375 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
H/L | None | None | 0.92 | N | 0.543 | 0.353 | 0.615448732319 | gnomAD-4.0.0 | 6.8407E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99295E-07 | 0 | 0 |
H/R | rs758526828 | -0.196 | 0.015 | N | 0.214 | 0.295 | 0.199424873507 | gnomAD-2.1.1 | 7.97E-06 | None | None | None | None | N | None | 0 | 5.78E-05 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
H/R | rs758526828 | -0.196 | 0.015 | N | 0.214 | 0.295 | 0.199424873507 | gnomAD-4.0.0 | 5.47256E-06 | None | None | None | None | N | None | 0 | 1.3418E-04 | None | 0 | 0 | None | 0 | 0 | 8.99295E-07 | 1.15934E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
H/A | 0.5483 | ambiguous | 0.6585 | pathogenic | 0.338 | Stabilizing | 0.863 | D | 0.57 | neutral | None | None | None | None | N |
H/C | 0.3672 | ambiguous | 0.5119 | ambiguous | 0.714 | Stabilizing | 0.1 | N | 0.495 | neutral | None | None | None | None | N |
H/D | 0.5187 | ambiguous | 0.6759 | pathogenic | 0.057 | Stabilizing | 0.959 | D | 0.493 | neutral | N | 0.479305464 | None | None | N |
H/E | 0.4425 | ambiguous | 0.5915 | pathogenic | 0.089 | Stabilizing | 0.884 | D | 0.394 | neutral | None | None | None | None | N |
H/F | 0.5614 | ambiguous | 0.6451 | pathogenic | 1.042 | Stabilizing | 0.997 | D | 0.486 | neutral | None | None | None | None | N |
H/G | 0.6 | likely_pathogenic | 0.722 | pathogenic | 0.056 | Stabilizing | 0.969 | D | 0.539 | neutral | None | None | None | None | N |
H/I | 0.6474 | likely_pathogenic | 0.7393 | pathogenic | 1.058 | Stabilizing | 0.991 | D | 0.541 | neutral | None | None | None | None | N |
H/K | 0.3564 | ambiguous | 0.484 | ambiguous | 0.345 | Stabilizing | 0.759 | D | 0.475 | neutral | None | None | None | None | N |
H/L | 0.2699 | likely_benign | 0.3662 | ambiguous | 1.058 | Stabilizing | 0.92 | D | 0.543 | neutral | N | 0.50419406 | None | None | N |
H/M | 0.7302 | likely_pathogenic | 0.7914 | pathogenic | 0.757 | Stabilizing | 0.997 | D | 0.523 | neutral | None | None | None | None | N |
H/N | 0.2283 | likely_benign | 0.2932 | benign | 0.28 | Stabilizing | 0.959 | D | 0.419 | neutral | N | 0.48937075 | None | None | N |
H/P | 0.5299 | ambiguous | 0.6926 | pathogenic | 0.843 | Stabilizing | 0.996 | D | 0.53 | neutral | N | 0.471231104 | None | None | N |
H/Q | 0.2383 | likely_benign | 0.3216 | benign | 0.395 | Stabilizing | 0.31 | N | 0.258 | neutral | N | 0.483089017 | None | None | N |
H/R | 0.1245 | likely_benign | 0.1869 | benign | -0.25 | Destabilizing | 0.015 | N | 0.214 | neutral | N | 0.455966152 | None | None | N |
H/S | 0.4102 | ambiguous | 0.4984 | ambiguous | 0.361 | Stabilizing | 0.939 | D | 0.481 | neutral | None | None | None | None | N |
H/T | 0.519 | ambiguous | 0.6247 | pathogenic | 0.496 | Stabilizing | 0.969 | D | 0.553 | neutral | None | None | None | None | N |
H/V | 0.533 | ambiguous | 0.6309 | pathogenic | 0.843 | Stabilizing | 0.939 | D | 0.535 | neutral | None | None | None | None | N |
H/W | 0.5313 | ambiguous | 0.6268 | pathogenic | 1.039 | Stabilizing | 0.999 | D | 0.541 | neutral | None | None | None | None | N |
H/Y | 0.174 | likely_benign | 0.2325 | benign | 1.302 | Stabilizing | 0.986 | D | 0.463 | neutral | N | 0.487886094 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.