Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 32965 | 99118;99119;99120 | chr2:178539042;178539041;178539040 | chr2:179403769;179403768;179403767 |
N2AB | 31324 | 94195;94196;94197 | chr2:178539042;178539041;178539040 | chr2:179403769;179403768;179403767 |
N2A | 30397 | 91414;91415;91416 | chr2:178539042;178539041;178539040 | chr2:179403769;179403768;179403767 |
N2B | 23900 | 71923;71924;71925 | chr2:178539042;178539041;178539040 | chr2:179403769;179403768;179403767 |
Novex-1 | 24025 | 72298;72299;72300 | chr2:178539042;178539041;178539040 | chr2:179403769;179403768;179403767 |
Novex-2 | 24092 | 72499;72500;72501 | chr2:178539042;178539041;178539040 | chr2:179403769;179403768;179403767 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/G | rs767147750 | -0.216 | 1.0 | N | 0.748 | 0.5 | 0.266385636622 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.89E-06 | 0 |
D/G | rs767147750 | -0.216 | 1.0 | N | 0.748 | 0.5 | 0.266385636622 | gnomAD-4.0.0 | 1.59137E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.85866E-06 | 0 | 0 |
D/H | rs186405108 | 0.004 | 1.0 | N | 0.745 | 0.386 | None | gnomAD-2.1.1 | 2.10666E-04 | None | None | None | None | N | None | 4.13E-05 | 2.83E-05 | None | 0 | 0 | None | 0 | None | 1.99968E-04 | 3.9079E-04 | 2.80662E-04 |
D/H | rs186405108 | 0.004 | 1.0 | N | 0.745 | 0.386 | None | gnomAD-3.1.2 | 2.03754E-04 | None | None | None | None | N | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 4.11571E-04 | 0 | 4.78011E-04 |
D/H | rs186405108 | 0.004 | 1.0 | N | 0.745 | 0.386 | None | gnomAD-4.0.0 | 3.56337E-04 | None | None | None | None | N | None | 8.01111E-05 | 3.33444E-05 | None | 0 | 0 | None | 1.71848E-04 | 0 | 4.5518E-04 | 0 | 3.04253E-04 |
D/N | rs186405108 | 0.003 | 1.0 | N | 0.761 | 0.368 | None | gnomAD-2.1.1 | 5.71E-05 | None | None | None | None | N | None | 6.61157E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
D/N | rs186405108 | 0.003 | 1.0 | N | 0.761 | 0.368 | None | gnomAD-3.1.2 | 1.70891E-04 | None | None | None | None | N | None | 6.03427E-04 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
D/N | rs186405108 | 0.003 | 1.0 | N | 0.761 | 0.368 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
D/N | rs186405108 | 0.003 | 1.0 | N | 0.761 | 0.368 | None | gnomAD-4.0.0 | 3.34623E-05 | None | None | None | None | N | None | 6.53177E-04 | 1.66667E-05 | None | 0 | 0 | None | 0 | 0 | 2.54292E-06 | 0 | 1.60077E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/A | 0.3573 | ambiguous | 0.3734 | ambiguous | -0.223 | Destabilizing | 1.0 | D | 0.773 | deleterious | N | 0.457817132 | None | None | N |
D/C | 0.8474 | likely_pathogenic | 0.842 | pathogenic | -0.05 | Destabilizing | 1.0 | D | 0.814 | deleterious | None | None | None | None | N |
D/E | 0.2632 | likely_benign | 0.2797 | benign | -0.264 | Destabilizing | 1.0 | D | 0.498 | neutral | N | 0.484753017 | None | None | N |
D/F | 0.8051 | likely_pathogenic | 0.812 | pathogenic | -0.188 | Destabilizing | 1.0 | D | 0.792 | deleterious | None | None | None | None | N |
D/G | 0.1916 | likely_benign | 0.2029 | benign | -0.417 | Destabilizing | 1.0 | D | 0.748 | deleterious | N | 0.37088322 | None | None | N |
D/H | 0.5303 | ambiguous | 0.5476 | ambiguous | 0.019 | Stabilizing | 1.0 | D | 0.745 | deleterious | N | 0.490236195 | None | None | N |
D/I | 0.8331 | likely_pathogenic | 0.8264 | pathogenic | 0.239 | Stabilizing | 1.0 | D | 0.802 | deleterious | None | None | None | None | N |
D/K | 0.7024 | likely_pathogenic | 0.7228 | pathogenic | 0.16 | Stabilizing | 1.0 | D | 0.773 | deleterious | None | None | None | None | N |
D/L | 0.6748 | likely_pathogenic | 0.6809 | pathogenic | 0.239 | Stabilizing | 1.0 | D | 0.809 | deleterious | None | None | None | None | N |
D/M | 0.8404 | likely_pathogenic | 0.8442 | pathogenic | 0.284 | Stabilizing | 1.0 | D | 0.81 | deleterious | None | None | None | None | N |
D/N | 0.1032 | likely_benign | 0.1074 | benign | -0.021 | Destabilizing | 1.0 | D | 0.761 | deleterious | N | 0.432246684 | None | None | N |
D/P | 0.9705 | likely_pathogenic | 0.9719 | pathogenic | 0.107 | Stabilizing | 1.0 | D | 0.776 | deleterious | None | None | None | None | N |
D/Q | 0.6054 | likely_pathogenic | 0.6237 | pathogenic | 0.007 | Stabilizing | 1.0 | D | 0.805 | deleterious | None | None | None | None | N |
D/R | 0.7462 | likely_pathogenic | 0.7658 | pathogenic | 0.384 | Stabilizing | 1.0 | D | 0.813 | deleterious | None | None | None | None | N |
D/S | 0.2034 | likely_benign | 0.2136 | benign | -0.172 | Destabilizing | 1.0 | D | 0.779 | deleterious | None | None | None | None | N |
D/T | 0.5219 | ambiguous | 0.5332 | ambiguous | -0.028 | Destabilizing | 1.0 | D | 0.767 | deleterious | None | None | None | None | N |
D/V | 0.6424 | likely_pathogenic | 0.634 | pathogenic | 0.107 | Stabilizing | 1.0 | D | 0.809 | deleterious | N | 0.474864731 | None | None | N |
D/W | 0.9693 | likely_pathogenic | 0.9709 | pathogenic | -0.09 | Destabilizing | 1.0 | D | 0.813 | deleterious | None | None | None | None | N |
D/Y | 0.4104 | ambiguous | 0.4211 | ambiguous | 0.034 | Stabilizing | 1.0 | D | 0.789 | deleterious | N | 0.46984228 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.