Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 33120 | 99583;99584;99585 | chr2:178537849;178537848;178537847 | chr2:179402576;179402575;179402574 |
N2AB | 31479 | 94660;94661;94662 | chr2:178537849;178537848;178537847 | chr2:179402576;179402575;179402574 |
N2A | 30552 | 91879;91880;91881 | chr2:178537849;178537848;178537847 | chr2:179402576;179402575;179402574 |
N2B | 24055 | 72388;72389;72390 | chr2:178537849;178537848;178537847 | chr2:179402576;179402575;179402574 |
Novex-1 | 24180 | 72763;72764;72765 | chr2:178537849;178537848;178537847 | chr2:179402576;179402575;179402574 |
Novex-2 | 24247 | 72964;72965;72966 | chr2:178537849;178537848;178537847 | chr2:179402576;179402575;179402574 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs772473414 | -1.615 | 0.338 | D | 0.451 | 0.132 | None | gnomAD-2.1.1 | 2.14E-05 | None | None | None | None | N | None | 4.13E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 3.91E-05 | 0 |
L/F | rs772473414 | -1.615 | 0.338 | D | 0.451 | 0.132 | None | gnomAD-3.1.2 | 3.29E-05 | None | None | None | None | N | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 4.41E-05 | 0 | 0 |
L/F | rs772473414 | -1.615 | 0.338 | D | 0.451 | 0.132 | None | gnomAD-4.0.0 | 1.1156E-05 | None | None | None | None | N | None | 2.67065E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 1.35628E-05 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.9181 | likely_pathogenic | 0.9229 | pathogenic | -2.599 | Highly Destabilizing | 0.996 | D | 0.745 | deleterious | None | None | None | None | N |
L/C | 0.891 | likely_pathogenic | 0.9005 | pathogenic | -2.129 | Highly Destabilizing | 1.0 | D | 0.779 | deleterious | None | None | None | None | N |
L/D | 0.9983 | likely_pathogenic | 0.998 | pathogenic | -2.894 | Highly Destabilizing | 1.0 | D | 0.89 | deleterious | None | None | None | None | N |
L/E | 0.9907 | likely_pathogenic | 0.9895 | pathogenic | -2.6 | Highly Destabilizing | 1.0 | D | 0.885 | deleterious | None | None | None | None | N |
L/F | 0.1523 | likely_benign | 0.1656 | benign | -1.456 | Destabilizing | 0.338 | N | 0.451 | neutral | D | 0.531462034 | None | None | N |
L/G | 0.9824 | likely_pathogenic | 0.9818 | pathogenic | -3.219 | Highly Destabilizing | 0.999 | D | 0.885 | deleterious | None | None | None | None | N |
L/H | 0.9429 | likely_pathogenic | 0.9292 | pathogenic | -2.774 | Highly Destabilizing | 1.0 | D | 0.869 | deleterious | D | 0.641222263 | None | None | N |
L/I | 0.161 | likely_benign | 0.1635 | benign | -0.765 | Destabilizing | 0.87 | D | 0.665 | neutral | D | 0.545641866 | None | None | N |
L/K | 0.9814 | likely_pathogenic | 0.9792 | pathogenic | -1.813 | Destabilizing | 0.999 | D | 0.869 | deleterious | None | None | None | None | N |
L/M | 0.1481 | likely_benign | 0.1898 | benign | -1.033 | Destabilizing | 0.995 | D | 0.757 | deleterious | None | None | None | None | N |
L/N | 0.9874 | likely_pathogenic | 0.987 | pathogenic | -2.324 | Highly Destabilizing | 1.0 | D | 0.893 | deleterious | None | None | None | None | N |
L/P | 0.9958 | likely_pathogenic | 0.995 | pathogenic | -1.362 | Destabilizing | 1.0 | D | 0.893 | deleterious | D | 0.641222263 | None | None | N |
L/Q | 0.9386 | likely_pathogenic | 0.9307 | pathogenic | -2.05 | Highly Destabilizing | 1.0 | D | 0.878 | deleterious | None | None | None | None | N |
L/R | 0.9694 | likely_pathogenic | 0.9609 | pathogenic | -1.807 | Destabilizing | 1.0 | D | 0.861 | deleterious | D | 0.641222263 | None | None | N |
L/S | 0.9806 | likely_pathogenic | 0.9802 | pathogenic | -3.07 | Highly Destabilizing | 1.0 | D | 0.875 | deleterious | None | None | None | None | N |
L/T | 0.9514 | likely_pathogenic | 0.9547 | pathogenic | -2.604 | Highly Destabilizing | 1.0 | D | 0.815 | deleterious | None | None | None | None | N |
L/V | 0.2568 | likely_benign | 0.2689 | benign | -1.362 | Destabilizing | 0.898 | D | 0.702 | prob.neutral | D | 0.554544486 | None | None | N |
L/W | 0.796 | likely_pathogenic | 0.7434 | pathogenic | -1.82 | Destabilizing | 1.0 | D | 0.836 | deleterious | None | None | None | None | N |
L/Y | 0.788 | likely_pathogenic | 0.7715 | pathogenic | -1.565 | Destabilizing | 0.998 | D | 0.811 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.