Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 33154 | 99685;99686;99687 | chr2:178537747;178537746;178537745 | chr2:179402474;179402473;179402472 |
N2AB | 31513 | 94762;94763;94764 | chr2:178537747;178537746;178537745 | chr2:179402474;179402473;179402472 |
N2A | 30586 | 91981;91982;91983 | chr2:178537747;178537746;178537745 | chr2:179402474;179402473;179402472 |
N2B | 24089 | 72490;72491;72492 | chr2:178537747;178537746;178537745 | chr2:179402474;179402473;179402472 |
Novex-1 | 24214 | 72865;72866;72867 | chr2:178537747;178537746;178537745 | chr2:179402474;179402473;179402472 |
Novex-2 | 24281 | 73066;73067;73068 | chr2:178537747;178537746;178537745 | chr2:179402474;179402473;179402472 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs143556947 | -0.652 | 1.0 | N | 0.711 | 0.486 | None | gnomAD-2.1.1 | 3.21E-05 | None | None | None | None | N | None | 1.65385E-04 | 0 | None | 0 | 0 | None | 0 | None | 4E-05 | 3.12E-05 | 0 |
R/C | rs143556947 | -0.652 | 1.0 | N | 0.711 | 0.486 | None | gnomAD-3.1.2 | 9.21E-05 | None | None | None | None | N | None | 1.93171E-04 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 7.35E-05 | 0 | 0 |
R/C | rs143556947 | -0.652 | 1.0 | N | 0.711 | 0.486 | None | 1000 genomes | 5.99042E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 3E-03 | None | None | None | 0 | None |
R/C | rs143556947 | -0.652 | 1.0 | N | 0.711 | 0.486 | None | gnomAD-4.0.0 | 2.23089E-05 | None | None | None | None | N | None | 1.73347E-04 | 1.667E-05 | None | 0 | 2.22846E-05 | None | 1.56323E-05 | 0 | 1.52573E-05 | 1.09803E-05 | 1.60051E-05 |
R/G | rs143556947 | -1.266 | 1.0 | N | 0.691 | 0.422 | 0.673759014288 | gnomAD-2.1.1 | 4.01E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.86E-06 | 0 |
R/G | rs143556947 | -1.266 | 1.0 | N | 0.691 | 0.422 | 0.673759014288 | gnomAD-4.0.0 | 4.10532E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.39684E-06 | 0 | 0 |
R/H | rs753958605 | -1.4 | 1.0 | N | 0.737 | 0.378 | 0.384252928164 | gnomAD-2.1.1 | 2.01E-05 | None | None | None | None | N | None | 6.46E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 3.54E-05 | 0 |
R/H | rs753958605 | -1.4 | 1.0 | N | 0.737 | 0.378 | 0.384252928164 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/H | rs753958605 | -1.4 | 1.0 | N | 0.737 | 0.378 | 0.384252928164 | gnomAD-4.0.0 | 6.19728E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 7.62862E-06 | 0 | 1.60123E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.8839 | likely_pathogenic | 0.8893 | pathogenic | -0.482 | Destabilizing | 0.999 | D | 0.664 | neutral | None | None | None | None | N |
R/C | 0.5929 | likely_pathogenic | 0.6663 | pathogenic | -0.25 | Destabilizing | 1.0 | D | 0.711 | prob.delet. | N | 0.487542889 | None | None | N |
R/D | 0.9407 | likely_pathogenic | 0.9447 | pathogenic | -0.027 | Destabilizing | 1.0 | D | 0.729 | prob.delet. | None | None | None | None | N |
R/E | 0.8139 | likely_pathogenic | 0.8187 | pathogenic | 0.094 | Stabilizing | 0.997 | D | 0.702 | prob.neutral | None | None | None | None | N |
R/F | 0.8838 | likely_pathogenic | 0.8866 | pathogenic | -0.312 | Destabilizing | 1.0 | D | 0.699 | prob.neutral | None | None | None | None | N |
R/G | 0.7605 | likely_pathogenic | 0.7969 | pathogenic | -0.803 | Destabilizing | 1.0 | D | 0.691 | prob.neutral | N | 0.452902463 | None | None | N |
R/H | 0.328 | likely_benign | 0.362 | ambiguous | -1.295 | Destabilizing | 1.0 | D | 0.737 | prob.delet. | N | 0.495117232 | None | None | N |
R/I | 0.7142 | likely_pathogenic | 0.7102 | pathogenic | 0.375 | Stabilizing | 0.999 | D | 0.708 | prob.delet. | None | None | None | None | N |
R/K | 0.2755 | likely_benign | 0.2913 | benign | -0.52 | Destabilizing | 0.979 | D | 0.538 | neutral | None | None | None | None | N |
R/L | 0.6347 | likely_pathogenic | 0.6634 | pathogenic | 0.375 | Stabilizing | 1.0 | D | 0.691 | prob.neutral | N | 0.516935298 | None | None | N |
R/M | 0.7557 | likely_pathogenic | 0.7645 | pathogenic | 0.07 | Stabilizing | 1.0 | D | 0.694 | prob.neutral | None | None | None | None | N |
R/N | 0.8783 | likely_pathogenic | 0.8898 | pathogenic | 0.04 | Stabilizing | 1.0 | D | 0.743 | deleterious | None | None | None | None | N |
R/P | 0.9468 | likely_pathogenic | 0.9512 | pathogenic | 0.111 | Stabilizing | 1.0 | D | 0.701 | prob.neutral | N | 0.489998424 | None | None | N |
R/Q | 0.2877 | likely_benign | 0.3041 | benign | -0.09 | Destabilizing | 1.0 | D | 0.742 | deleterious | None | None | None | None | N |
R/S | 0.8977 | likely_pathogenic | 0.9089 | pathogenic | -0.586 | Destabilizing | 1.0 | D | 0.709 | prob.delet. | N | 0.489516624 | None | None | N |
R/T | 0.8008 | likely_pathogenic | 0.8021 | pathogenic | -0.285 | Destabilizing | 1.0 | D | 0.7 | prob.neutral | None | None | None | None | N |
R/V | 0.8069 | likely_pathogenic | 0.8152 | pathogenic | 0.111 | Stabilizing | 0.999 | D | 0.705 | prob.neutral | None | None | None | None | N |
R/W | 0.5857 | likely_pathogenic | 0.6119 | pathogenic | -0.055 | Destabilizing | 1.0 | D | 0.716 | prob.delet. | None | None | None | None | N |
R/Y | 0.7576 | likely_pathogenic | 0.7757 | pathogenic | 0.256 | Stabilizing | 0.999 | D | 0.715 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.