Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 33599 | 101020;101021;101022 | chr2:178535820;178535819;178535818 | chr2:179400547;179400546;179400545 |
N2AB | 31958 | 96097;96098;96099 | chr2:178535820;178535819;178535818 | chr2:179400547;179400546;179400545 |
N2A | 31031 | 93316;93317;93318 | chr2:178535820;178535819;178535818 | chr2:179400547;179400546;179400545 |
N2B | 24534 | 73825;73826;73827 | chr2:178535820;178535819;178535818 | chr2:179400547;179400546;179400545 |
Novex-1 | 24659 | 74200;74201;74202 | chr2:178535820;178535819;178535818 | chr2:179400547;179400546;179400545 |
Novex-2 | 24726 | 74401;74402;74403 | chr2:178535820;178535819;178535818 | chr2:179400547;179400546;179400545 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | None | None | 0.996 | N | 0.74 | 0.228 | 0.332386209738 | gnomAD-4.0.0 | 1.6474E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.96296E-06 | 0 | 0 |
L/I | None | None | 0.722 | N | 0.533 | 0.17 | 0.209622950755 | gnomAD-4.0.0 | 1.64738E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.96295E-06 | 0 | 0 |
L/P | rs775361062 | -0.116 | 1.0 | N | 0.76 | 0.457 | 0.721476075706 | gnomAD-2.1.1 | 4.16E-06 | None | None | None | None | I | None | 6.51E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.6714 | likely_pathogenic | 0.5879 | pathogenic | -1.057 | Destabilizing | 0.992 | D | 0.681 | prob.neutral | None | None | None | None | I |
L/C | 0.9094 | likely_pathogenic | 0.8928 | pathogenic | -0.87 | Destabilizing | 1.0 | D | 0.727 | prob.delet. | None | None | None | None | I |
L/D | 0.9752 | likely_pathogenic | 0.9677 | pathogenic | -0.322 | Destabilizing | 1.0 | D | 0.755 | deleterious | None | None | None | None | I |
L/E | 0.8848 | likely_pathogenic | 0.843 | pathogenic | -0.384 | Destabilizing | 0.999 | D | 0.737 | prob.delet. | None | None | None | None | I |
L/F | 0.4535 | ambiguous | 0.364 | ambiguous | -0.951 | Destabilizing | 0.996 | D | 0.74 | deleterious | N | 0.498327242 | None | None | I |
L/G | 0.9166 | likely_pathogenic | 0.8883 | pathogenic | -1.282 | Destabilizing | 0.999 | D | 0.73 | prob.delet. | None | None | None | None | I |
L/H | 0.8265 | likely_pathogenic | 0.7935 | pathogenic | -0.604 | Destabilizing | 1.0 | D | 0.744 | deleterious | N | 0.461367335 | None | None | I |
L/I | 0.2143 | likely_benign | 0.1787 | benign | -0.56 | Destabilizing | 0.722 | D | 0.533 | neutral | N | 0.495726867 | None | None | I |
L/K | 0.8363 | likely_pathogenic | 0.8034 | pathogenic | -0.597 | Destabilizing | 0.96 | D | 0.731 | prob.delet. | None | None | None | None | I |
L/M | 0.1899 | likely_benign | 0.1674 | benign | -0.513 | Destabilizing | 0.665 | D | 0.425 | neutral | None | None | None | None | I |
L/N | 0.9129 | likely_pathogenic | 0.8941 | pathogenic | -0.364 | Destabilizing | 0.999 | D | 0.755 | deleterious | None | None | None | None | I |
L/P | 0.9 | likely_pathogenic | 0.8634 | pathogenic | -0.692 | Destabilizing | 1.0 | D | 0.76 | deleterious | N | 0.461367335 | None | None | I |
L/Q | 0.6863 | likely_pathogenic | 0.6267 | pathogenic | -0.579 | Destabilizing | 0.999 | D | 0.744 | deleterious | None | None | None | None | I |
L/R | 0.7902 | likely_pathogenic | 0.7515 | pathogenic | -0.061 | Destabilizing | 0.996 | D | 0.738 | prob.delet. | N | 0.460606866 | None | None | I |
L/S | 0.8421 | likely_pathogenic | 0.7838 | pathogenic | -0.921 | Destabilizing | 0.999 | D | 0.732 | prob.delet. | None | None | None | None | I |
L/T | 0.6439 | likely_pathogenic | 0.567 | pathogenic | -0.864 | Destabilizing | 0.996 | D | 0.744 | deleterious | None | None | None | None | I |
L/V | 0.2326 | likely_benign | 0.1925 | benign | -0.692 | Destabilizing | 0.774 | D | 0.545 | neutral | N | 0.442297814 | None | None | I |
L/W | 0.7259 | likely_pathogenic | 0.6458 | pathogenic | -0.947 | Destabilizing | 1.0 | D | 0.741 | deleterious | None | None | None | None | I |
L/Y | 0.8403 | likely_pathogenic | 0.7928 | pathogenic | -0.7 | Destabilizing | 0.987 | D | 0.757 | deleterious | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.