Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 3363 | 10312;10313;10314 | chr2:178764204;178764203;178764202 | chr2:179628931;179628930;179628929 |
N2AB | 3363 | 10312;10313;10314 | chr2:178764204;178764203;178764202 | chr2:179628931;179628930;179628929 |
N2A | 3363 | 10312;10313;10314 | chr2:178764204;178764203;178764202 | chr2:179628931;179628930;179628929 |
N2B | 3317 | 10174;10175;10176 | chr2:178764204;178764203;178764202 | chr2:179628931;179628930;179628929 |
Novex-1 | 3317 | 10174;10175;10176 | chr2:178764204;178764203;178764202 | chr2:179628931;179628930;179628929 |
Novex-2 | 3317 | 10174;10175;10176 | chr2:178764204;178764203;178764202 | chr2:179628931;179628930;179628929 |
Novex-3 | 3363 | 10312;10313;10314 | chr2:178764204;178764203;178764202 | chr2:179628931;179628930;179628929 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs764030230 | -0.128 | 0.002 | D | 0.503 | 0.389 | 0.514184785564 | gnomAD-2.1.1 | 2.83E-05 | None | None | None | None | N | None | 0 | 1.41107E-04 | None | 0 | 0 | None | 0 | None | 0 | 2.32E-05 | 0 |
R/C | rs764030230 | -0.128 | 0.002 | D | 0.503 | 0.389 | 0.514184785564 | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 0 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 4.41E-05 | 0 | 0 |
R/C | rs764030230 | -0.128 | 0.002 | D | 0.503 | 0.389 | 0.514184785564 | gnomAD-4.0.0 | 1.30118E-05 | None | None | None | None | N | None | 0 | 1.16671E-04 | None | 0 | 0 | None | 0 | 0 | 1.10172E-05 | 0 | 1.60046E-05 |
R/G | None | None | 0.13 | D | 0.543 | 0.452 | 0.543165868402 | gnomAD-4.0.0 | 6.84086E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.15934E-05 | 0 |
R/H | rs148169214 | -1.11 | None | N | 0.281 | 0.191 | None | gnomAD-2.1.1 | 2.33473E-04 | None | None | None | None | N | None | 2.04278E-03 | 2.82E-05 | None | 0 | 2.50954E-04 | None | 3.27E-05 | None | 0 | 5.42E-05 | 1.38504E-04 |
R/H | rs148169214 | -1.11 | None | N | 0.281 | 0.191 | None | gnomAD-3.1.2 | 7.42737E-04 | None | None | None | None | N | None | 2.6063E-03 | 0 | 0 | 0 | 1.92678E-04 | None | 0 | 0 | 4.41E-05 | 0 | 4.77555E-04 |
R/H | rs148169214 | -1.11 | None | N | 0.281 | 0.191 | None | 1000 genomes | 7.98722E-04 | None | None | None | None | N | None | 3E-03 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/H | rs148169214 | -1.11 | None | N | 0.281 | 0.191 | None | gnomAD-4.0.0 | 1.52411E-04 | None | None | None | None | N | None | 2.47881E-03 | 1.66628E-05 | None | 0 | 4.45772E-05 | None | 0 | 1.64962E-04 | 3.64423E-05 | 3.29381E-05 | 1.5998E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.2667 | likely_benign | 0.281 | benign | -0.294 | Destabilizing | 0.016 | N | 0.519 | neutral | None | None | None | None | N |
R/C | 0.1042 | likely_benign | 0.0894 | benign | -0.144 | Destabilizing | 0.002 | N | 0.503 | neutral | D | 0.562333372 | None | None | N |
R/D | 0.5286 | ambiguous | 0.544 | ambiguous | 0.099 | Stabilizing | 0.072 | N | 0.535 | neutral | None | None | None | None | N |
R/E | 0.3114 | likely_benign | 0.3451 | ambiguous | 0.217 | Stabilizing | 0.016 | N | 0.573 | neutral | None | None | None | None | N |
R/F | 0.3041 | likely_benign | 0.2771 | benign | -0.104 | Destabilizing | 0.214 | N | 0.534 | neutral | None | None | None | None | N |
R/G | 0.2171 | likely_benign | 0.2277 | benign | -0.603 | Destabilizing | 0.13 | N | 0.543 | neutral | D | 0.655958947 | None | None | N |
R/H | 0.0683 | likely_benign | 0.0664 | benign | -1.081 | Destabilizing | None | N | 0.281 | neutral | N | 0.521472719 | None | None | N |
R/I | 0.168 | likely_benign | 0.1588 | benign | 0.527 | Stabilizing | 0.214 | N | 0.541 | neutral | None | None | None | None | N |
R/K | 0.1355 | likely_benign | 0.1483 | benign | -0.332 | Destabilizing | 0.016 | N | 0.567 | neutral | None | None | None | None | N |
R/L | 0.1451 | likely_benign | 0.1379 | benign | 0.527 | Stabilizing | 0.07 | N | 0.547 | neutral | N | 0.518718672 | None | None | N |
R/M | 0.2849 | likely_benign | 0.2779 | benign | 0.105 | Stabilizing | 0.628 | D | 0.555 | neutral | None | None | None | None | N |
R/N | 0.351 | ambiguous | 0.3574 | ambiguous | 0.189 | Stabilizing | 0.038 | N | 0.553 | neutral | None | None | None | None | N |
R/P | 0.7455 | likely_pathogenic | 0.8019 | pathogenic | 0.276 | Stabilizing | 0.515 | D | 0.546 | neutral | D | 0.694157157 | None | None | N |
R/Q | 0.0938 | likely_benign | 0.097 | benign | 0.081 | Stabilizing | 0.003 | N | 0.369 | neutral | None | None | None | None | N |
R/S | 0.252 | likely_benign | 0.2776 | benign | -0.384 | Destabilizing | 0.13 | N | 0.557 | neutral | N | 0.512267312 | None | None | N |
R/T | 0.1643 | likely_benign | 0.1846 | benign | -0.092 | Destabilizing | 0.072 | N | 0.555 | neutral | None | None | None | None | N |
R/V | 0.2097 | likely_benign | 0.2029 | benign | 0.276 | Stabilizing | 0.072 | N | 0.531 | neutral | None | None | None | None | N |
R/W | 0.1434 | likely_benign | 0.1312 | benign | 0.113 | Stabilizing | 0.864 | D | 0.515 | neutral | None | None | None | None | N |
R/Y | 0.1982 | likely_benign | 0.1806 | benign | 0.425 | Stabilizing | 0.12 | N | 0.551 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.