Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 3388 | 10387;10388;10389 | chr2:178759125;178759124;178759123 | chr2:179623852;179623851;179623850 |
N2AB | 3388 | 10387;10388;10389 | chr2:178759125;178759124;178759123 | chr2:179623852;179623851;179623850 |
N2A | 3388 | 10387;10388;10389 | chr2:178759125;178759124;178759123 | chr2:179623852;179623851;179623850 |
N2B | 3342 | 10249;10250;10251 | chr2:178759125;178759124;178759123 | chr2:179623852;179623851;179623850 |
Novex-1 | 3342 | 10249;10250;10251 | chr2:178759125;178759124;178759123 | chr2:179623852;179623851;179623850 |
Novex-2 | 3342 | 10249;10250;10251 | chr2:178759125;178759124;178759123 | chr2:179623852;179623851;179623850 |
Novex-3 | 3388 | 10387;10388;10389 | chr2:178759125;178759124;178759123 | chr2:179623852;179623851;179623850 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/L | None | None | 0.82 | N | 0.284 | 0.343 | 0.604606306746 | gnomAD-4.0.0 | 6.84125E-07 | None | None | None | None | N | None | 2.98704E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/Q | rs187703540 | 0.182 | 0.91 | N | 0.233 | 0.179 | None | gnomAD-2.1.1 | 7.165E-04 | None | None | None | None | N | None | 2.80404E-04 | 5.65E-05 | None | 0 | 9.19506E-03 | None | 2.6137E-04 | None | 0 | 7.79E-06 | 1.38927E-04 |
R/Q | rs187703540 | 0.182 | 0.91 | N | 0.233 | 0.179 | None | gnomAD-3.1.2 | 5.12901E-04 | None | None | None | None | N | None | 2.65675E-04 | 0 | 0 | 0 | 1.1946E-02 | None | 0 | 0 | 1.47E-05 | 6.21118E-04 | 4.78469E-04 |
R/Q | rs187703540 | 0.182 | 0.91 | N | 0.233 | 0.179 | None | 1000 genomes | 3.79393E-03 | None | None | None | None | N | None | 0 | 0 | None | None | 1.88E-02 | 0 | None | None | None | 0 | None |
R/Q | rs187703540 | 0.182 | 0.91 | N | 0.233 | 0.179 | None | gnomAD-4.0.0 | 2.17483E-04 | None | None | None | None | N | None | 2.5332E-04 | 3.33344E-05 | None | 0 | 6.19954E-03 | None | 0 | 0 | 5.08503E-06 | 2.19597E-04 | 4.15987E-04 |
R/W | rs758680640 | -0.461 | 0.999 | D | 0.22 | 0.483 | 0.431379191433 | gnomAD-2.1.1 | 2.13E-05 | None | None | None | None | N | None | 0 | 8.47E-05 | None | 0 | 5.02E-05 | None | 3.27E-05 | None | 0 | 7.79E-06 | 0 |
R/W | rs758680640 | -0.461 | 0.999 | D | 0.22 | 0.483 | 0.431379191433 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | N | None | 0 | 6.55E-05 | 0 | 0 | 1.92678E-04 | None | 0 | 0 | 0 | 0 | 0 |
R/W | rs758680640 | -0.461 | 0.999 | D | 0.22 | 0.483 | 0.431379191433 | gnomAD-4.0.0 | 4.0897E-05 | None | None | None | None | N | None | 1.33504E-05 | 8.33556E-05 | None | 0 | 2.22965E-05 | None | 0 | 0 | 4.83078E-05 | 1.09818E-05 | 1.60061E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.418 | ambiguous | 0.557 | ambiguous | 0.029 | Stabilizing | 0.495 | N | 0.291 | neutral | None | None | None | None | N |
R/C | 0.2711 | likely_benign | 0.3273 | benign | -0.386 | Destabilizing | 0.995 | D | 0.193 | neutral | None | None | None | None | N |
R/D | 0.6367 | likely_pathogenic | 0.7488 | pathogenic | -0.329 | Destabilizing | 0.003 | N | 0.141 | neutral | None | None | None | None | N |
R/E | 0.4445 | ambiguous | 0.5706 | pathogenic | -0.282 | Destabilizing | 0.013 | N | 0.121 | neutral | None | None | None | None | N |
R/F | 0.733 | likely_pathogenic | 0.8231 | pathogenic | -0.36 | Destabilizing | 0.981 | D | 0.209 | neutral | None | None | None | None | N |
R/G | 0.3036 | likely_benign | 0.3997 | ambiguous | -0.098 | Destabilizing | 0.653 | D | 0.237 | neutral | N | 0.492105614 | None | None | N |
R/H | 0.1344 | likely_benign | 0.165 | benign | -0.697 | Destabilizing | 0.981 | D | 0.227 | neutral | None | None | None | None | N |
R/I | 0.3699 | ambiguous | 0.5025 | ambiguous | 0.316 | Stabilizing | 0.944 | D | 0.249 | neutral | None | None | None | None | N |
R/K | 0.1816 | likely_benign | 0.2202 | benign | -0.224 | Destabilizing | 0.003 | N | 0.127 | neutral | None | None | None | None | N |
R/L | 0.2952 | likely_benign | 0.4037 | ambiguous | 0.316 | Stabilizing | 0.82 | D | 0.284 | neutral | N | 0.492871788 | None | None | N |
R/M | 0.4735 | ambiguous | 0.5856 | pathogenic | -0.193 | Destabilizing | 0.981 | D | 0.229 | neutral | None | None | None | None | N |
R/N | 0.5872 | likely_pathogenic | 0.6999 | pathogenic | -0.27 | Destabilizing | 0.704 | D | 0.213 | neutral | None | None | None | None | N |
R/P | 0.3375 | likely_benign | 0.4505 | ambiguous | 0.238 | Stabilizing | 0.902 | D | 0.283 | neutral | N | 0.479148754 | None | None | N |
R/Q | 0.1344 | likely_benign | 0.1684 | benign | -0.24 | Destabilizing | 0.91 | D | 0.233 | neutral | N | 0.50237116 | None | None | N |
R/S | 0.4605 | ambiguous | 0.598 | pathogenic | -0.394 | Destabilizing | 0.495 | N | 0.27 | neutral | None | None | None | None | N |
R/T | 0.3237 | likely_benign | 0.453 | ambiguous | -0.24 | Destabilizing | 0.704 | D | 0.271 | neutral | None | None | None | None | N |
R/V | 0.4663 | ambiguous | 0.5817 | pathogenic | 0.238 | Stabilizing | 0.828 | D | 0.308 | neutral | None | None | None | None | N |
R/W | 0.3077 | likely_benign | 0.3258 | benign | -0.606 | Destabilizing | 0.999 | D | 0.22 | neutral | D | 0.580528872 | None | None | N |
R/Y | 0.487 | ambiguous | 0.5966 | pathogenic | -0.182 | Destabilizing | 0.981 | D | 0.229 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.