Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 34161 | 102706;102707;102708 | chr2:178534134;178534133;178534132 | chr2:179398861;179398860;179398859 |
N2AB | 32520 | 97783;97784;97785 | chr2:178534134;178534133;178534132 | chr2:179398861;179398860;179398859 |
N2A | 31593 | 95002;95003;95004 | chr2:178534134;178534133;178534132 | chr2:179398861;179398860;179398859 |
N2B | 25096 | 75511;75512;75513 | chr2:178534134;178534133;178534132 | chr2:179398861;179398860;179398859 |
Novex-1 | 25221 | 75886;75887;75888 | chr2:178534134;178534133;178534132 | chr2:179398861;179398860;179398859 |
Novex-2 | 25288 | 76087;76088;76089 | chr2:178534134;178534133;178534132 | chr2:179398861;179398860;179398859 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/Y | rs1278747931 | -0.507 | 1.0 | D | 0.65 | 0.491 | 0.432266382184 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.88E-06 | 0 |
N/Y | rs1278747931 | -0.507 | 1.0 | D | 0.65 | 0.491 | 0.432266382184 | gnomAD-4.0.0 | 3.18194E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.71543E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/A | 0.7686 | likely_pathogenic | 0.7423 | pathogenic | -0.324 | Destabilizing | 0.997 | D | 0.56 | neutral | None | None | None | None | N |
N/C | 0.8511 | likely_pathogenic | 0.8482 | pathogenic | 0.231 | Stabilizing | 1.0 | D | 0.698 | prob.neutral | None | None | None | None | N |
N/D | 0.4437 | ambiguous | 0.3909 | ambiguous | 0.188 | Stabilizing | 0.998 | D | 0.616 | neutral | N | 0.497040029 | None | None | N |
N/E | 0.8113 | likely_pathogenic | 0.7617 | pathogenic | 0.203 | Stabilizing | 0.998 | D | 0.633 | neutral | None | None | None | None | N |
N/F | 0.9233 | likely_pathogenic | 0.9068 | pathogenic | -0.477 | Destabilizing | 1.0 | D | 0.683 | prob.neutral | None | None | None | None | N |
N/G | 0.6775 | likely_pathogenic | 0.6339 | pathogenic | -0.557 | Destabilizing | 0.998 | D | 0.533 | neutral | None | None | None | None | N |
N/H | 0.35 | ambiguous | 0.2942 | benign | -0.492 | Destabilizing | 1.0 | D | 0.695 | prob.neutral | N | 0.508681175 | None | None | N |
N/I | 0.8512 | likely_pathogenic | 0.8381 | pathogenic | 0.216 | Stabilizing | 0.999 | D | 0.67 | neutral | N | 0.508681175 | None | None | N |
N/K | 0.7743 | likely_pathogenic | 0.6662 | pathogenic | -0.034 | Destabilizing | 0.998 | D | 0.635 | neutral | N | 0.508334458 | None | None | N |
N/L | 0.8097 | likely_pathogenic | 0.7891 | pathogenic | 0.216 | Stabilizing | 0.999 | D | 0.621 | neutral | None | None | None | None | N |
N/M | 0.8551 | likely_pathogenic | 0.8396 | pathogenic | 0.31 | Stabilizing | 1.0 | D | 0.628 | neutral | None | None | None | None | N |
N/P | 0.968 | likely_pathogenic | 0.9679 | pathogenic | 0.065 | Stabilizing | 1.0 | D | 0.631 | neutral | None | None | None | None | N |
N/Q | 0.7642 | likely_pathogenic | 0.6963 | pathogenic | -0.381 | Destabilizing | 1.0 | D | 0.694 | prob.neutral | None | None | None | None | N |
N/R | 0.8035 | likely_pathogenic | 0.7082 | pathogenic | -0.066 | Destabilizing | 1.0 | D | 0.71 | prob.delet. | None | None | None | None | N |
N/S | 0.3323 | likely_benign | 0.3234 | benign | -0.309 | Destabilizing | 0.992 | D | 0.517 | neutral | N | 0.453846612 | None | None | N |
N/T | 0.5907 | likely_pathogenic | 0.5712 | pathogenic | -0.135 | Destabilizing | 0.767 | D | 0.275 | neutral | D | 0.526920219 | None | None | N |
N/V | 0.8594 | likely_pathogenic | 0.8505 | pathogenic | 0.065 | Stabilizing | 0.999 | D | 0.639 | neutral | None | None | None | None | N |
N/W | 0.9719 | likely_pathogenic | 0.9664 | pathogenic | -0.448 | Destabilizing | 1.0 | D | 0.715 | prob.delet. | None | None | None | None | N |
N/Y | 0.4559 | ambiguous | 0.3964 | ambiguous | -0.188 | Destabilizing | 1.0 | D | 0.65 | neutral | D | 0.527440294 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.