Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 34316 | 103171;103172;103173 | chr2:178533669;178533668;178533667 | chr2:179398396;179398395;179398394 |
N2AB | 32675 | 98248;98249;98250 | chr2:178533669;178533668;178533667 | chr2:179398396;179398395;179398394 |
N2A | 31748 | 95467;95468;95469 | chr2:178533669;178533668;178533667 | chr2:179398396;179398395;179398394 |
N2B | 25251 | 75976;75977;75978 | chr2:178533669;178533668;178533667 | chr2:179398396;179398395;179398394 |
Novex-1 | 25376 | 76351;76352;76353 | chr2:178533669;178533668;178533667 | chr2:179398396;179398395;179398394 |
Novex-2 | 25443 | 76552;76553;76554 | chr2:178533669;178533668;178533667 | chr2:179398396;179398395;179398394 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Y/C | rs1406877841 | None | 0.1 | N | 0.611 | 0.263 | 0.21737058555 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
Y/C | rs1406877841 | None | 0.1 | N | 0.611 | 0.263 | 0.21737058555 | gnomAD-4.0.0 | 6.56996E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.46985E-05 | 0 | 0 |
Y/H | None | None | 0.997 | N | 0.76 | 0.442 | 0.225215365344 | gnomAD-4.0.0 | 1.20032E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.3125E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Y/A | 0.9681 | likely_pathogenic | 0.9753 | pathogenic | -2.814 | Highly Destabilizing | 0.91 | D | 0.601 | neutral | None | None | None | None | N |
Y/C | 0.5424 | ambiguous | 0.6298 | pathogenic | -1.804 | Destabilizing | 0.1 | N | 0.611 | neutral | N | 0.404997715 | None | None | N |
Y/D | 0.972 | likely_pathogenic | 0.9813 | pathogenic | -2.427 | Highly Destabilizing | 0.997 | D | 0.813 | deleterious | N | 0.450558374 | None | None | N |
Y/E | 0.9877 | likely_pathogenic | 0.9918 | pathogenic | -2.235 | Highly Destabilizing | 0.998 | D | 0.764 | deleterious | None | None | None | None | N |
Y/F | 0.1956 | likely_benign | 0.2076 | benign | -0.943 | Destabilizing | 0.99 | D | 0.619 | neutral | N | 0.489170962 | None | None | N |
Y/G | 0.9653 | likely_pathogenic | 0.9732 | pathogenic | -3.239 | Highly Destabilizing | 0.993 | D | 0.759 | deleterious | None | None | None | None | N |
Y/H | 0.5276 | ambiguous | 0.6331 | pathogenic | -1.703 | Destabilizing | 0.997 | D | 0.76 | deleterious | N | 0.44649762 | None | None | N |
Y/I | 0.9162 | likely_pathogenic | 0.927 | pathogenic | -1.437 | Destabilizing | 0.986 | D | 0.721 | prob.delet. | None | None | None | None | N |
Y/K | 0.9709 | likely_pathogenic | 0.9815 | pathogenic | -1.948 | Destabilizing | 0.998 | D | 0.758 | deleterious | None | None | None | None | N |
Y/L | 0.8378 | likely_pathogenic | 0.8593 | pathogenic | -1.437 | Destabilizing | 0.91 | D | 0.6 | neutral | None | None | None | None | N |
Y/M | 0.952 | likely_pathogenic | 0.9575 | pathogenic | -1.279 | Destabilizing | 0.999 | D | 0.765 | deleterious | None | None | None | None | N |
Y/N | 0.8606 | likely_pathogenic | 0.8975 | pathogenic | -2.614 | Highly Destabilizing | 0.997 | D | 0.791 | deleterious | N | 0.48039955 | None | None | N |
Y/P | 0.9966 | likely_pathogenic | 0.9974 | pathogenic | -1.905 | Destabilizing | 0.998 | D | 0.821 | deleterious | None | None | None | None | N |
Y/Q | 0.9453 | likely_pathogenic | 0.9651 | pathogenic | -2.369 | Highly Destabilizing | 0.998 | D | 0.78 | deleterious | None | None | None | None | N |
Y/R | 0.9039 | likely_pathogenic | 0.9364 | pathogenic | -1.703 | Destabilizing | 0.998 | D | 0.797 | deleterious | None | None | None | None | N |
Y/S | 0.8534 | likely_pathogenic | 0.8922 | pathogenic | -3.127 | Highly Destabilizing | 0.982 | D | 0.699 | prob.neutral | N | 0.462733722 | None | None | N |
Y/T | 0.9594 | likely_pathogenic | 0.9674 | pathogenic | -2.812 | Highly Destabilizing | 0.986 | D | 0.719 | prob.delet. | None | None | None | None | N |
Y/V | 0.8735 | likely_pathogenic | 0.8932 | pathogenic | -1.905 | Destabilizing | 0.953 | D | 0.653 | neutral | None | None | None | None | N |
Y/W | 0.6032 | likely_pathogenic | 0.6567 | pathogenic | -0.264 | Destabilizing | 0.999 | D | 0.751 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.