Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 34326 | 103201;103202;103203 | chr2:178533639;178533638;178533637 | chr2:179398366;179398365;179398364 |
N2AB | 32685 | 98278;98279;98280 | chr2:178533639;178533638;178533637 | chr2:179398366;179398365;179398364 |
N2A | 31758 | 95497;95498;95499 | chr2:178533639;178533638;178533637 | chr2:179398366;179398365;179398364 |
N2B | 25261 | 76006;76007;76008 | chr2:178533639;178533638;178533637 | chr2:179398366;179398365;179398364 |
Novex-1 | 25386 | 76381;76382;76383 | chr2:178533639;178533638;178533637 | chr2:179398366;179398365;179398364 |
Novex-2 | 25453 | 76582;76583;76584 | chr2:178533639;178533638;178533637 | chr2:179398366;179398365;179398364 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/N | rs1227502652 | None | 0.004 | N | 0.224 | 0.127 | 0.134241683229 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
D/N | rs1227502652 | None | 0.004 | N | 0.224 | 0.127 | 0.134241683229 | gnomAD-4.0.0 | 6.56935E-06 | None | None | None | None | N | None | 2.41208E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/A | 0.1034 | likely_benign | 0.1028 | benign | -0.193 | Destabilizing | 0.062 | N | 0.409 | neutral | N | 0.437320777 | None | None | N |
D/C | 0.5624 | ambiguous | 0.5745 | pathogenic | 0.253 | Stabilizing | 0.935 | D | 0.535 | neutral | None | None | None | None | N |
D/E | 0.0889 | likely_benign | 0.0881 | benign | -0.236 | Destabilizing | None | N | 0.145 | neutral | N | 0.387811889 | None | None | N |
D/F | 0.5744 | likely_pathogenic | 0.5815 | pathogenic | -0.371 | Destabilizing | 0.791 | D | 0.481 | neutral | None | None | None | None | N |
D/G | 0.1283 | likely_benign | 0.1296 | benign | -0.331 | Destabilizing | None | N | 0.232 | neutral | N | 0.482285062 | None | None | N |
D/H | 0.2441 | likely_benign | 0.2419 | benign | -0.132 | Destabilizing | 0.484 | N | 0.416 | neutral | N | 0.438000754 | None | None | N |
D/I | 0.3202 | likely_benign | 0.3203 | benign | 0.109 | Stabilizing | 0.555 | D | 0.479 | neutral | None | None | None | None | N |
D/K | 0.2274 | likely_benign | 0.2088 | benign | 0.512 | Stabilizing | 0.081 | N | 0.386 | neutral | None | None | None | None | N |
D/L | 0.3183 | likely_benign | 0.3086 | benign | 0.109 | Stabilizing | 0.38 | N | 0.449 | neutral | None | None | None | None | N |
D/M | 0.4904 | ambiguous | 0.4828 | ambiguous | 0.298 | Stabilizing | 0.935 | D | 0.474 | neutral | None | None | None | None | N |
D/N | 0.0913 | likely_benign | 0.0982 | benign | 0.334 | Stabilizing | 0.004 | N | 0.224 | neutral | N | 0.47133735 | None | None | N |
D/P | 0.7269 | likely_pathogenic | 0.6861 | pathogenic | 0.029 | Stabilizing | 0.555 | D | 0.407 | neutral | None | None | None | None | N |
D/Q | 0.2257 | likely_benign | 0.2119 | benign | 0.327 | Stabilizing | 0.235 | N | 0.385 | neutral | None | None | None | None | N |
D/R | 0.2887 | likely_benign | 0.2648 | benign | 0.572 | Stabilizing | 0.235 | N | 0.467 | neutral | None | None | None | None | N |
D/S | 0.0868 | likely_benign | 0.0898 | benign | 0.236 | Stabilizing | 0.007 | N | 0.231 | neutral | None | None | None | None | N |
D/T | 0.1633 | likely_benign | 0.1653 | benign | 0.341 | Stabilizing | 0.081 | N | 0.385 | neutral | None | None | None | None | N |
D/V | 0.1924 | likely_benign | 0.1937 | benign | 0.029 | Stabilizing | 0.317 | N | 0.458 | neutral | N | 0.440393837 | None | None | N |
D/W | 0.8393 | likely_pathogenic | 0.8228 | pathogenic | -0.319 | Destabilizing | 0.935 | D | 0.609 | neutral | None | None | None | None | N |
D/Y | 0.2473 | likely_benign | 0.2527 | benign | -0.149 | Destabilizing | 0.741 | D | 0.48 | neutral | N | 0.438254244 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.