Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 35136 | 105631;105632;105633 | chr2:178531209;178531208;178531207 | chr2:179395936;179395935;179395934 |
N2AB | 33495 | 100708;100709;100710 | chr2:178531209;178531208;178531207 | chr2:179395936;179395935;179395934 |
N2A | 32568 | 97927;97928;97929 | chr2:178531209;178531208;178531207 | chr2:179395936;179395935;179395934 |
N2B | 26071 | 78436;78437;78438 | chr2:178531209;178531208;178531207 | chr2:179395936;179395935;179395934 |
Novex-1 | 26196 | 78811;78812;78813 | chr2:178531209;178531208;178531207 | chr2:179395936;179395935;179395934 |
Novex-2 | 26263 | 79012;79013;79014 | chr2:178531209;178531208;178531207 | chr2:179395936;179395935;179395934 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/G | rs372875128 | -0.091 | 0.911 | N | 0.476 | 0.353 | None | gnomAD-2.1.1 | 1.43E-05 | None | None | None | None | N | None | 1.65344E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
R/G | rs372875128 | -0.091 | 0.911 | N | 0.476 | 0.353 | None | gnomAD-3.1.2 | 3.29E-05 | None | None | None | None | N | None | 1.20639E-04 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/G | rs372875128 | -0.091 | 0.911 | N | 0.476 | 0.353 | None | gnomAD-4.0.0 | 3.71781E-06 | None | None | None | None | N | None | 8.00833E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/Q | rs554213990 | 0.196 | 0.113 | N | 0.129 | 0.165 | 0.218845423259 | gnomAD-2.1.1 | 1.61E-05 | None | None | None | None | N | None | 6.46E-05 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 1.77E-05 | 0 |
R/Q | rs554213990 | 0.196 | 0.113 | N | 0.129 | 0.165 | 0.218845423259 | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 3.16456E-03 | 1.47E-05 | 0 | 0 |
R/Q | rs554213990 | 0.196 | 0.113 | N | 0.129 | 0.165 | 0.218845423259 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/Q | rs554213990 | 0.196 | 0.113 | N | 0.129 | 0.165 | 0.218845423259 | gnomAD-4.0.0 | 1.92081E-05 | None | None | None | None | N | None | 2.6661E-05 | 0 | None | 3.37747E-05 | 0 | None | 0 | 1.64962E-04 | 1.61036E-05 | 5.49064E-05 | 4.80077E-05 |
R/W | rs372875128 | -0.335 | 0.999 | N | 0.491 | 0.55 | 0.559195274915 | gnomAD-2.1.1 | 4.99E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 6.14251E-04 | None | 0 | None | 0 | 1.56E-05 | 0 |
R/W | rs372875128 | -0.335 | 0.999 | N | 0.491 | 0.55 | 0.559195274915 | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 1.92382E-04 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
R/W | rs372875128 | -0.335 | 0.999 | N | 0.491 | 0.55 | 0.559195274915 | gnomAD-4.0.0 | 4.27548E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 6.23636E-04 | None | 0 | 0 | 3.2207E-05 | 0 | 4.80292E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.4757 | ambiguous | 0.4398 | ambiguous | 0.042 | Stabilizing | 0.688 | D | 0.438 | neutral | None | None | None | None | N |
R/C | 0.2736 | likely_benign | 0.2334 | benign | -0.212 | Destabilizing | 0.998 | D | 0.47 | neutral | None | None | None | None | N |
R/D | 0.7971 | likely_pathogenic | 0.7669 | pathogenic | -0.284 | Destabilizing | 0.842 | D | 0.488 | neutral | None | None | None | None | N |
R/E | 0.4728 | ambiguous | 0.437 | ambiguous | -0.247 | Destabilizing | 0.525 | D | 0.443 | neutral | None | None | None | None | N |
R/F | 0.6831 | likely_pathogenic | 0.647 | pathogenic | -0.289 | Destabilizing | 0.991 | D | 0.472 | neutral | None | None | None | None | N |
R/G | 0.3416 | ambiguous | 0.3146 | benign | -0.089 | Destabilizing | 0.911 | D | 0.476 | neutral | N | 0.489692769 | None | None | N |
R/H | 0.1386 | likely_benign | 0.1265 | benign | -0.591 | Destabilizing | 0.974 | D | 0.479 | neutral | None | None | None | None | N |
R/I | 0.4227 | ambiguous | 0.3909 | ambiguous | 0.34 | Stabilizing | 0.974 | D | 0.485 | neutral | None | None | None | None | N |
R/K | 0.1423 | likely_benign | 0.1318 | benign | -0.132 | Destabilizing | 0.525 | D | 0.404 | neutral | None | None | None | None | N |
R/L | 0.3351 | likely_benign | 0.3025 | benign | 0.34 | Stabilizing | 0.911 | D | 0.476 | neutral | N | 0.494175869 | None | None | N |
R/M | 0.4768 | ambiguous | 0.4288 | ambiguous | -0.076 | Destabilizing | 0.991 | D | 0.471 | neutral | None | None | None | None | N |
R/N | 0.7018 | likely_pathogenic | 0.6634 | pathogenic | -0.024 | Destabilizing | 0.842 | D | 0.471 | neutral | None | None | None | None | N |
R/P | 0.6708 | likely_pathogenic | 0.6495 | pathogenic | 0.258 | Stabilizing | 0.986 | D | 0.458 | neutral | N | 0.491212922 | None | None | N |
R/Q | 0.1169 | likely_benign | 0.1112 | benign | -0.067 | Destabilizing | 0.113 | N | 0.129 | neutral | N | 0.429046955 | None | None | N |
R/S | 0.5416 | ambiguous | 0.5043 | ambiguous | -0.201 | Destabilizing | 0.842 | D | 0.457 | neutral | None | None | None | None | N |
R/T | 0.3817 | ambiguous | 0.3389 | benign | -0.063 | Destabilizing | 0.842 | D | 0.456 | neutral | None | None | None | None | N |
R/V | 0.4555 | ambiguous | 0.4196 | ambiguous | 0.258 | Stabilizing | 0.974 | D | 0.453 | neutral | None | None | None | None | N |
R/W | 0.2738 | likely_benign | 0.2462 | benign | -0.481 | Destabilizing | 0.999 | D | 0.491 | neutral | N | 0.505370882 | None | None | N |
R/Y | 0.5244 | ambiguous | 0.4813 | ambiguous | -0.075 | Destabilizing | 0.991 | D | 0.496 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.