Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 3989 | 12190;12191;12192 | chr2:178741268;178741267;178741266 | chr2:179605995;179605994;179605993 |
N2AB | 3672 | 11239;11240;11241 | chr2:178741268;178741267;178741266 | chr2:179605995;179605994;179605993 |
N2A | None | None | chr2:None | chr2:None |
N2B | 3626 | 11101;11102;11103 | chr2:178741268;178741267;178741266 | chr2:179605995;179605994;179605993 |
Novex-1 | 3751 | 11476;11477;11478 | chr2:178741268;178741267;178741266 | chr2:179605995;179605994;179605993 |
Novex-2 | 3818 | 11677;11678;11679 | chr2:178741268;178741267;178741266 | chr2:179605995;179605994;179605993 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/S | None | None | 0.001 | N | 0.109 | 0.159 | None | gnomAD-4.0.0 | 1.20032E-06 | None | None | None | None | N | None | 6.33473E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/A | 0.3393 | likely_benign | 0.3172 | benign | -0.442 | Destabilizing | 0.116 | N | 0.336 | neutral | None | None | None | None | N |
N/C | 0.3539 | ambiguous | 0.3216 | benign | 0.468 | Stabilizing | 0.944 | D | 0.413 | neutral | None | None | None | None | N |
N/D | 0.1557 | likely_benign | 0.1423 | benign | -0.233 | Destabilizing | 0.09 | N | 0.313 | neutral | N | 0.500291879 | None | None | N |
N/E | 0.4008 | ambiguous | 0.3787 | ambiguous | -0.249 | Destabilizing | 0.116 | N | 0.311 | neutral | None | None | None | None | N |
N/F | 0.5485 | ambiguous | 0.5155 | ambiguous | -0.708 | Destabilizing | 0.69 | D | 0.445 | neutral | None | None | None | None | N |
N/G | 0.4112 | ambiguous | 0.3886 | ambiguous | -0.657 | Destabilizing | 0.116 | N | 0.277 | neutral | None | None | None | None | N |
N/H | 0.0875 | likely_benign | 0.0781 | benign | -0.758 | Destabilizing | 0.001 | N | 0.107 | neutral | D | 0.543393912 | None | None | N |
N/I | 0.256 | likely_benign | 0.2491 | benign | 0.048 | Stabilizing | 0.627 | D | 0.459 | neutral | D | 0.618071929 | None | None | N |
N/K | 0.3194 | likely_benign | 0.3027 | benign | -0.009 | Destabilizing | 0.001 | N | 0.114 | neutral | N | 0.503534856 | None | None | N |
N/L | 0.2487 | likely_benign | 0.237 | benign | 0.048 | Stabilizing | 0.388 | N | 0.376 | neutral | None | None | None | None | N |
N/M | 0.4137 | ambiguous | 0.4007 | ambiguous | 0.637 | Stabilizing | 0.818 | D | 0.368 | neutral | None | None | None | None | N |
N/P | 0.7554 | likely_pathogenic | 0.7313 | pathogenic | -0.088 | Destabilizing | 0.69 | D | 0.423 | neutral | None | None | None | None | N |
N/Q | 0.3566 | ambiguous | 0.3429 | ambiguous | -0.494 | Destabilizing | 0.008 | N | 0.171 | neutral | None | None | None | None | N |
N/R | 0.3646 | ambiguous | 0.3361 | benign | 0.051 | Stabilizing | 0.241 | N | 0.264 | neutral | None | None | None | None | N |
N/S | 0.107 | likely_benign | 0.1024 | benign | -0.236 | Destabilizing | 0.001 | N | 0.109 | neutral | N | 0.508367426 | None | None | N |
N/T | 0.1818 | likely_benign | 0.1765 | benign | -0.103 | Destabilizing | 0.193 | N | 0.263 | neutral | N | 0.505965516 | None | None | N |
N/V | 0.3434 | ambiguous | 0.3228 | benign | -0.088 | Destabilizing | 0.388 | N | 0.4 | neutral | None | None | None | None | N |
N/W | 0.82 | likely_pathogenic | 0.7784 | pathogenic | -0.644 | Destabilizing | 0.981 | D | 0.445 | neutral | None | None | None | None | N |
N/Y | 0.1724 | likely_benign | 0.1569 | benign | -0.401 | Destabilizing | 0.457 | N | 0.42 | neutral | N | 0.514705971 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.