Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 4620 | 14083;14084;14085 | chr2:178739375;178739374;178739373 | chr2:179604102;179604101;179604100 |
N2AB | 4303 | 13132;13133;13134 | chr2:178739375;178739374;178739373 | chr2:179604102;179604101;179604100 |
N2A | None | None | chr2:None | chr2:None |
N2B | 4257 | 12994;12995;12996 | chr2:178739375;178739374;178739373 | chr2:179604102;179604101;179604100 |
Novex-1 | 4382 | 13369;13370;13371 | chr2:178739375;178739374;178739373 | chr2:179604102;179604101;179604100 |
Novex-2 | 4449 | 13570;13571;13572 | chr2:178739375;178739374;178739373 | chr2:179604102;179604101;179604100 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G/D | rs55857742 | -1.448 | 0.002 | D | 0.334 | 0.404 | None | gnomAD-2.1.1 | 3.5296E-03 | None | None | None | None | N | None | 2.06594E-04 | 7.63964E-04 | None | 1.06465E-03 | 1.02648E-04 | None | 2.23842E-02 | None | 4E-05 | 1.83849E-03 | 3.09249E-03 |
G/D | rs55857742 | -1.448 | 0.002 | D | 0.334 | 0.404 | None | gnomAD-3.1.2 | 1.81364E-03 | None | None | None | None | N | None | 2.41289E-04 | 1.83366E-03 | 0 | 8.65052E-04 | 0 | None | 9.41E-05 | 0 | 1.69028E-03 | 2.38391E-02 | 1.91022E-03 |
G/D | rs55857742 | -1.448 | 0.002 | D | 0.334 | 0.404 | None | 1000 genomes | 5.99042E-03 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 3E-03 | None | None | None | 2.66E-02 | None |
G/D | rs55857742 | -1.448 | 0.002 | D | 0.334 | 0.404 | None | gnomAD-4.0.0 | 2.23065E-03 | None | None | None | None | N | None | 3.19812E-04 | 9.999E-04 | None | 8.44652E-04 | 1.56069E-04 | None | 7.80982E-05 | 4.12541E-03 | 1.10271E-03 | 2.16298E-02 | 2.92875E-03 |
G/R | rs905994651 | None | 0.81 | D | 0.669 | 0.606 | None | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
G/R | rs905994651 | None | 0.81 | D | 0.669 | 0.606 | None | gnomAD-4.0.0 | 6.57168E-06 | None | None | None | None | N | None | 2.41313E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
G/S | None | None | 0.379 | D | 0.413 | 0.521 | None | gnomAD-4.0.0 | 2.40064E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.3125E-06 | 0 | 3.66327E-05 |
G/V | rs55857742 | -0.549 | 0.81 | D | 0.701 | 0.642 | None | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.58E-05 | None | 0 | None | 0 | 0 | 0 |
G/V | rs55857742 | -0.549 | 0.81 | D | 0.701 | 0.642 | None | gnomAD-4.0.0 | 1.36838E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.52067E-05 | None | 0 | 0 | 8.99444E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G/A | 0.2512 | likely_benign | 0.267 | benign | -0.553 | Destabilizing | 0.549 | D | 0.377 | neutral | D | 0.758472485 | None | None | N |
G/C | 0.3877 | ambiguous | 0.4035 | ambiguous | -0.967 | Destabilizing | 0.99 | D | 0.734 | prob.delet. | D | 0.757969104 | None | None | N |
G/D | 0.1671 | likely_benign | 0.2632 | benign | -0.975 | Destabilizing | 0.002 | N | 0.334 | neutral | D | 0.602686106 | None | None | N |
G/E | 0.2441 | likely_benign | 0.2611 | benign | -1.133 | Destabilizing | 0.005 | N | 0.458 | neutral | None | None | None | None | N |
G/F | 0.6948 | likely_pathogenic | 0.7168 | pathogenic | -1.174 | Destabilizing | 0.739 | D | 0.712 | prob.delet. | None | None | None | None | N |
G/H | 0.5107 | ambiguous | 0.5272 | ambiguous | -0.761 | Destabilizing | 0.012 | N | 0.551 | neutral | None | None | None | None | N |
G/I | 0.6075 | likely_pathogenic | 0.6293 | pathogenic | -0.612 | Destabilizing | 0.92 | D | 0.72 | prob.delet. | None | None | None | None | N |
G/K | 0.4728 | ambiguous | 0.493 | ambiguous | -1.109 | Destabilizing | 0.447 | N | 0.649 | neutral | None | None | None | None | N |
G/L | 0.6164 | likely_pathogenic | 0.6363 | pathogenic | -0.612 | Destabilizing | 0.85 | D | 0.703 | prob.neutral | None | None | None | None | N |
G/M | 0.6216 | likely_pathogenic | 0.6336 | pathogenic | -0.488 | Destabilizing | 0.992 | D | 0.729 | prob.delet. | None | None | None | None | N |
G/N | 0.2365 | likely_benign | 0.2439 | benign | -0.747 | Destabilizing | 0.447 | N | 0.46 | neutral | None | None | None | None | N |
G/P | 0.9612 | likely_pathogenic | 0.969 | pathogenic | -0.558 | Destabilizing | 0.92 | D | 0.675 | neutral | None | None | None | None | N |
G/Q | 0.4395 | ambiguous | 0.4621 | ambiguous | -1.082 | Destabilizing | 0.739 | D | 0.655 | neutral | None | None | None | None | N |
G/R | 0.3966 | ambiguous | 0.4262 | ambiguous | -0.562 | Destabilizing | 0.81 | D | 0.669 | neutral | D | 0.672866288 | None | None | N |
G/S | 0.16 | likely_benign | 0.17 | benign | -0.896 | Destabilizing | 0.379 | N | 0.413 | neutral | D | 0.635071716 | None | None | N |
G/T | 0.3223 | likely_benign | 0.3337 | benign | -0.994 | Destabilizing | 0.85 | D | 0.657 | neutral | None | None | None | None | N |
G/V | 0.4708 | ambiguous | 0.5049 | ambiguous | -0.558 | Destabilizing | 0.81 | D | 0.701 | prob.neutral | D | 0.758206865 | None | None | N |
G/W | 0.4785 | ambiguous | 0.5033 | ambiguous | -1.31 | Destabilizing | 0.977 | D | 0.705 | prob.neutral | None | None | None | None | N |
G/Y | 0.4947 | ambiguous | 0.51 | ambiguous | -0.993 | Destabilizing | 0.012 | N | 0.546 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.