Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 4655 | 14188;14189;14190 | chr2:178739270;178739269;178739268 | chr2:179603997;179603996;179603995 |
N2AB | 4338 | 13237;13238;13239 | chr2:178739270;178739269;178739268 | chr2:179603997;179603996;179603995 |
N2A | None | None | chr2:None | chr2:None |
N2B | 4292 | 13099;13100;13101 | chr2:178739270;178739269;178739268 | chr2:179603997;179603996;179603995 |
Novex-1 | 4417 | 13474;13475;13476 | chr2:178739270;178739269;178739268 | chr2:179603997;179603996;179603995 |
Novex-2 | 4484 | 13675;13676;13677 | chr2:178739270;178739269;178739268 | chr2:179603997;179603996;179603995 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/H | rs1299692717 | None | 0.782 | D | 0.429 | 0.359 | None | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
D/H | rs1299692717 | None | 0.782 | D | 0.429 | 0.359 | None | gnomAD-4.0.0 | 2.48326E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 3.39635E-06 | 0 | 0 |
D/N | None | None | 0.003 | D | 0.188 | 0.135 | None | gnomAD-4.0.0 | 6.85563E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 9.01122E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/A | 0.1502 | likely_benign | 0.169 | benign | 0.014 | Stabilizing | 0.338 | N | 0.427 | neutral | D | 0.575166829 | None | None | N |
D/C | 0.5019 | ambiguous | 0.56 | ambiguous | 0.272 | Stabilizing | 0.991 | D | 0.642 | neutral | None | None | None | None | N |
D/E | 0.1193 | likely_benign | 0.1424 | benign | -0.188 | Destabilizing | 0.001 | N | 0.122 | neutral | N | 0.479760569 | None | None | N |
D/F | 0.3711 | ambiguous | 0.4173 | ambiguous | -0.228 | Destabilizing | 0.967 | D | 0.585 | neutral | None | None | None | None | N |
D/G | 0.1254 | likely_benign | 0.1423 | benign | -0.106 | Destabilizing | 0.338 | N | 0.361 | neutral | D | 0.587384741 | None | None | N |
D/H | 0.1647 | likely_benign | 0.1879 | benign | 0.057 | Stabilizing | 0.782 | D | 0.429 | neutral | D | 0.612248467 | None | None | N |
D/I | 0.2363 | likely_benign | 0.2733 | benign | 0.259 | Stabilizing | 0.906 | D | 0.588 | neutral | None | None | None | None | N |
D/K | 0.1987 | likely_benign | 0.243 | benign | 0.583 | Stabilizing | 0.404 | N | 0.361 | neutral | None | None | None | None | N |
D/L | 0.2506 | likely_benign | 0.292 | benign | 0.259 | Stabilizing | 0.826 | D | 0.57 | neutral | None | None | None | None | N |
D/M | 0.4625 | ambiguous | 0.5125 | ambiguous | 0.315 | Stabilizing | 0.991 | D | 0.597 | neutral | None | None | None | None | N |
D/N | 0.0852 | likely_benign | 0.0893 | benign | 0.507 | Stabilizing | 0.003 | N | 0.188 | neutral | D | 0.541488844 | None | None | N |
D/P | 0.7538 | likely_pathogenic | 0.8238 | pathogenic | 0.197 | Stabilizing | 0.906 | D | 0.42 | neutral | None | None | None | None | N |
D/Q | 0.209 | likely_benign | 0.2452 | benign | 0.484 | Stabilizing | 0.404 | N | 0.349 | neutral | None | None | None | None | N |
D/R | 0.2355 | likely_benign | 0.2781 | benign | 0.632 | Stabilizing | 0.704 | D | 0.509 | neutral | None | None | None | None | N |
D/S | 0.1125 | likely_benign | 0.1245 | benign | 0.394 | Stabilizing | 0.404 | N | 0.316 | neutral | None | None | None | None | N |
D/T | 0.2062 | likely_benign | 0.2378 | benign | 0.481 | Stabilizing | 0.575 | D | 0.405 | neutral | None | None | None | None | N |
D/V | 0.1538 | likely_benign | 0.1754 | benign | 0.197 | Stabilizing | 0.782 | D | 0.569 | neutral | D | 0.560630158 | None | None | N |
D/W | 0.722 | likely_pathogenic | 0.7657 | pathogenic | -0.224 | Destabilizing | 0.991 | D | 0.657 | neutral | None | None | None | None | N |
D/Y | 0.1353 | likely_benign | 0.1471 | benign | -0.01 | Destabilizing | 0.957 | D | 0.587 | neutral | D | 0.612376247 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.